Gene Afer_0005 details

Gene Information

• Locus tag: Afer_0005
• ID: 8322051
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 4247
• End bp: 6190
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644951152
• Product: DNA gyrase, B subunit
• Protein accession: YP_003108653
• Protein GI: 256370829
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01059] DNA gyrase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGTCGATC GAGGAAGGAT CAAGAGCTTG GAGCCCGAGG CAAGCTACAC CGCAGCCGAC 
ATCGTGGTCC TCGAGGGCTT GGAGCACGTC CGGCTGCGCC CGGGCATGTA CATCGGCTCC 
ACTGGTCCGA GCGGACTGCA CCACTTGGTG TGGGAAGTCG TCGACAACGC AGTCGACGAG 
GTCATGGCCG GCGCCTGCAC CGAGATCGAC GTCACCATCC TCGCCGACGG CGGCTGTCGG 
GTCGAAGACA ATGGTCGCGG TATTCCCGTC GACCCACATC CATCAGACCC GTCGAAGTCG 
GCAGCCGAGG TGGTGCTGAC GCAGCTCAAC GCTGGCGGCA AGTTCGGCAC GGGTGGTTAT 
AAGGTTTCTG GCGGTCTCCA TGGCGTTGGC GTGTCGGTCG TGAACGCGCT GTCGGCACGC 
CTCGTCCTCG AGGTTCACCG CGACGGTAGC ACCTATCGCA TGGAGTTCGT CAAGGGTGGG 
ACGCCGACGG GGCCGCTCGA GCGGATCGGC TCCTCTGGAG GCCGGCGAGG CACGGTGGTG 
ACCTTCTGGC CGGATCCGAC GATCTTCGAG GACACTGAGT TCTCTGCCCA GAGGATCCTG 
GAGCGCCTCC AGGTCATCGC CTTCCTCAAC AAGGGCGTGG TCGTGCGCTT CCGCGACGAG 
CGTCCTGGTC GAGAACATGA ACAGACGTTC TCCTACGCAG GTGGCATCGT GGACTTCGTT 
CGCCACCTGA ACGAGCCCAA GGGACCCCTC TTTGCGAAGG TGGGCTACTA CGCCGCGAGC 
GAGGAGGACA TGGAGGTCGA GGTGGCGTTC TCGTGGAACA CCACCTTCTA CGAGACGCTG 
TTCACCTTCG CGAACGGCAT CTCCACCGAA GAAGGCGGCA TGCACGCCGA GGGCTTCCGC 
AAGGCGCTCA CGCAGGTGAT CAATCGCTAC GCGAGGGCAC GGAACCTGCT CAAGGAGCGC 
GATGAGAATC TCGAGGGGAA CGACATCCGC GAGGGGATGA CCACCATCGT GTCGGTCCGT 
CTCGTCAACC CGCAGTTCGA GGGCCAGACC AAGACGAAGC TCGGCAACGT GTCGGTGCGA 
TCGTTCGTCG AGCGTGTGAC CAACGAGCAC CTGGCGACCT GGCTGGAGGA GAACCCTCGC 
GAAGCGCAGG CGATCGTTCA GAAGGCCATC GTGGCACAGC GTGCTCGCTT GGCCGCGAGA 
CAGGCTCGCG AGCTCACGAG GCGTAAGTCG GGGCTCGAGA GCGCGGGTCT GCCCGGCAAG 
CTCACGGACT GCACCTCGCG CGATCCCTCC GAGTCGGAGC TGTTCATCGT GGAGGGGAAC 
TCCGCTGGTG GCACGACCAT CAAGGGACGT GATCCGAAGA CCCAGGCAGT GCTTCCCATC 
CGTGGCAAGA TCCTCAACGT CGAACGTGCT CGACTCGACA AGATGCTCTC GAACCAGGAG 
ATCCAGTCGT TGATTGCGGC CATCGGCGCT GGAGTTGGTG ACGAGTTCGA CATCAAGAAG 
GCCCGCTACC ACAAGGTGAT CATCTTGGCC GACGCCGATC CTGACGGATC GCACATCCGC 
ACGCTGCTGC TGACGTTCTT CTTCCGTCAG ATGCGGCCGC TCGTCGAGGC GGGGATGGTC 
TACGCCGCAC AGCCGCCGCT GTACTCCACG TTGCTCGGCA CGGAGAAGGT CTACATCAAG 
AACGAAGCCG AGCGCCTGCG CTTTCTCGAA GCCCACCCCA ACCACAAGAA GCCATTCCTG 
CGGTTGAAGG GTCTTGGCGA GATGGACTTC GACGAGCTGC GCGACACCAC ACTCCATCAG 
GATCGGCGAA CCTTGCTGAA GGTCACCATC GAGCAGGCGG CGATCGCCGA CGAGGTGTGC 
AGTGTCTTGA TGGGCGACGA CGTCGAGCAG CGCCGTCGTT TCATCCAGGA GAACGCGGGC 
GACGCGCGTT TCATCGACTT CTAG 

 

Protein sequence

MVDRGRIKSL EPEASYTAAD IVVLEGLEHV RLRPGMYIGS TGPSGLHHLV WEVVDNAVDE 
VMAGACTEID VTILADGGCR VEDNGRGIPV DPHPSDPSKS AAEVVLTQLN AGGKFGTGGY 
KVSGGLHGVG VSVVNALSAR LVLEVHRDGS TYRMEFVKGG TPTGPLERIG SSGGRRGTVV 
TFWPDPTIFE DTEFSAQRIL ERLQVIAFLN KGVVVRFRDE RPGREHEQTF SYAGGIVDFV 
RHLNEPKGPL FAKVGYYAAS EEDMEVEVAF SWNTTFYETL FTFANGISTE EGGMHAEGFR 
KALTQVINRY ARARNLLKER DENLEGNDIR EGMTTIVSVR LVNPQFEGQT KTKLGNVSVR 
SFVERVTNEH LATWLEENPR EAQAIVQKAI VAQRARLAAR QARELTRRKS GLESAGLPGK 
LTDCTSRDPS ESELFIVEGN SAGGTTIKGR DPKTQAVLPI RGKILNVERA RLDKMLSNQE 
IQSLIAAIGA GVGDEFDIKK ARYHKVIILA DADPDGSHIR TLLLTFFFRQ MRPLVEAGMV 
YAAQPPLYST LLGTEKVYIK NEAERLRFLE AHPNHKKPFL RLKGLGEMDF DELRDTTLHQ 
DRRTLLKVTI EQAAIADEVC SVLMGDDVEQ RRRFIQENAG DARFIDF