| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0002 |
|---|
| Symbol | |
|---|
| ID | 8322048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 1687 |
|---|
| End bp | 2787 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644951149 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_003108650 |
|---|
| Protein GI | 256370826 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTTTC TCTGTGAACG CGACGAACTC GCATCGGCGC TCCAGGCGGC GTCACGAGCG
CTCTCGTCAC GCTCCTCGCT CGCGGGTGTG CGCTGGACGC TTCGAGGCGG CGAACTCGAG
GTCGAGGGAC GAGAGAGCGA CCTCGCGATT CGCAGTGTGC TGGGTGCGAT GGGAACCGAG
GGTTCGTTCC AGACGCCGGC GTCGCTCGCC GTCGATCTCG TTCGTACCAT GCCGAGCGAC
CAAGTCGAGG TGGTGGTCGA GGACGCATCG GTCGTGCTCC GATCGGGTCG GGCCGAAGTG
TCGCTGCAGC TGCTCCCGAC GCTCGAACTC CCCGGAATCG GAGAGGGCAC GACGCCGAGT
GCGACGGTGC CGGCTGCCGC GCTGGCCCAG GGGATTCGTC AGGTGGCCGT CGCGGCGGCT
CGCGACGACG GTCGCGACCT CATCTATTCC AGCATGCTCT TCTCCTCGAC CAATGACGGC
TTGCGGCTGG TCGCGACGGA CGGGACGAGG CTTGCGCTTC GTGACATCGC GAATCTCTCT
GTCGCGGGTT CGGAAGCTCG CGACGTCGTG ATCCCGACCA GGGCCGTTCG CGAGCTCGAG
AGGCTCGTCA CCGGTGCGGG TGTCGACGAG ATCCACGTCG GTATCGGCGA GCGCGATGCC
GTGTTCGTGG TCGGCACGAC CACGTTGGCC ACCCGGCTCG TCGACGAGCC CTTTCGCGAC
TATCGGCGGC TCGTGGAGGC CACCTATCCG AAGAAGCTCC TCCTGGATCG ATTGTCGCTG
GTCGATGCCA TGCGGCGGCT TCGCCGTATG GCCAAGGAGG CGCGGAACAG TTCGTCGATC
CAGATGAACA TGACGCCGAC GGCCTGCGAG CTCAGCGTGC GCATCCCGTC CGTCGGCCAG
GTGCACGAGG TCCTCGACGC GAACTTCAAC GATGCCGAGT TCACCATCAA CTTCGACCCG
GACATGCTCG CCGATGGCGT CGACGGTGTC GAGGGCGACG TCATCCGGCT CGAGTTCATC
GAGGCCAACC GTGCGGCGTG CGTGAGTTCG GCGGACACCC GCGAGTACCT GTACATCTTG
ATGCCGATCG TGGCCCGCTG A
|
|---|
| Protein sequence | MKFLCERDEL ASALQAASRA LSSRSSLAGV RWTLRGGELE VEGRESDLAI RSVLGAMGTE
GSFQTPASLA VDLVRTMPSD QVEVVVEDAS VVLRSGRAEV SLQLLPTLEL PGIGEGTTPS
ATVPAAALAQ GIRQVAVAAA RDDGRDLIYS SMLFSSTNDG LRLVATDGTR LALRDIANLS
VAGSEARDVV IPTRAVRELE RLVTGAGVDE IHVGIGERDA VFVVGTTTLA TRLVDEPFRD
YRRLVEATYP KKLLLDRLSL VDAMRRLRRM AKEARNSSSI QMNMTPTACE LSVRIPSVGQ
VHEVLDANFN DAEFTINFDP DMLADGVDGV EGDVIRLEFI EANRAACVSS ADTREYLYIL
MPIVAR
|
|---|
| |