| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6627 |
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| Symbol | rpoB |
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| ID | 8330839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 7760779 |
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| End bp | 7764261 |
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| Gene Length | 3483 bp |
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| Protein Length | 1160 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644947052 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003104270 |
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| Protein GI | 256380610 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.357912 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCGATCT CTCGCGCGAC CAAGGCCACT GCTGCGACCA ACTCCACGTC GGGGATCCCT
GGAGCGCCGA AGCGGGTTTC GTTTGCGAAG ATCCACGAGC CGCTCCAGAC GCCCAACCTG
CTCGACCTCC AGATCCAGTC GTTCGAGTGG CTCACCGGCG ACGAGGCGTG GTTCCAGCGC
CGAGTCGACG AGGGCGACGA GGCGCCGACG GGCGGCCTCG AAGAGGTCCT GAACGAGATC
TCCCCCATCG AGGACTTCTC CGGCTCGATG TCCCTGTCCT TCTCCGATCC GCGCTTCGAC
GAGGTCAAGG CCTCGACCGA GGAGTGCAAG GACAAGGACA TGACGTACGC GGCCCCGCTG
TTCGTCACCG CGGAGTTCAC CAACCACACC ACTGGCGAGA TCAAGAGCCA GACGGTGTTC
ATGGGTGACT TCCCGATGAT GACGGACAAG GGCACGTTCA TCATCAACGG CACCGAGCGG
GTCGTCGTGT CCCAGCTCGT CCGTTCCCCC GGCGTCTACT ACGACACCGC GATCGACAAG
ACGACCGACA AGGACGTCTT CTCGGTCAAG ATCATCCCTT CCAGGGGCGC GTGGCTGGAG
TTCGACGTCG ACAAGCGCGA CACCGTGGGT GTCCGCATCG ACCGCAAGCG CCGCCAGCCG
GTCACCGTGC TGCTCAAGGC CCTCGGCTGG AGCACCGAGC AGATCCGCGA GCGCTTCTCC
TTCAGCGAGA CGCTGCTGAC GACCCTGGAG AAGGACCACA CGGCGGGCAC CGACGAGGCC
CTGCTCGACA TCTACCGCAA GCTGCGCCCC GGCGAGCCCC CGACGAAGGA GTCCGCCCAG
GCCCTGCTGG AGACGCTCTT CTTCAAGGAG AAGCGCTACG ACCTCGCCAA GGTCGGCCGG
TACAAGGTCA ACAAGAAGCT GGGCCTGGAC ACCCCGATCA GCACCGGCGT GCTGACCGAG
GACGACATCG TCACGACGAT CGAGTACCTG GTCCGCCTGC ACGCCGGTGA GACCAGCATG
CAGCCGGGCG AGACCGAGGT GCCGGTCGAG GTCGACGACA TCGACCACTT CGGCAACCGC
CGCCTGCGCA CCGTCGGCGA GCTGATCCAG AACCAGATCC GGGTCGGCCT CTCCCGCATG
GAGCGCGTCG TGCGCGAGCG CATGACGACC CAGGACGTCG AGGCGATCAC GCCGCAGACC
CTGATCAACA TCCGTCCCGT CGTGGCGGCG ATCAAGGAGT TCTTCGGCAC GTCCCAGCTC
TCGCAGTTCA TGGACCAGAC CAACCCGCTG GCCGGTCTGA CCCACAAGCG CCGCCTCTCG
GCGCTGGGCC CCGGTGGTCT GTCGCGCGAG CGCGCCGGCA TGGAGGTCCG CGACGTCCAC
CCGTCGCACT ACGGCCGCAT GTGCCCCATC GAGACCCCTG AAGGCCCGAA CATCGGCCTG
ATCGGCTCGC TGTCCTCCTA CGGGCGGGTC AACCCGTTCG GCTTCATCGA GACGCCGTAC
CGCAAGGTCG TCGACGGCCG GGTCACCGAC CAGATCGACT ACCTGACCGC GGACGAGGAG
GACCGGTACG TCAAGGCCCA GGCGAACGCC AGGATCGACG GGGAGGGCAA CTTCCTCGAG
GGCAAGGTCC TGGTCCGCAA GAAGGGCGGC GAGGTCGAGA TGATCGACCC GCGCGACGTC
GACTACATGG ACGTCTCGCC CCGCCAGATG GTCTCGGCCG CGACGGCGAT GATCCCCTTC
CTGGAGCACG ACGACGCGAA CCGCGCCCTG ATGGGCGCGA ACATGCAGCG CCAGGCGGTG
CCGCTGCTGC GCAGCGAGTC CCCGCTGGTC GGCACCGGCA TGGAGCTGCG CGCCGCGGTC
GACGCCGGTG ACGTCGTGGT GGCCAAGAAG ACCGGCGTGG TGGAGGAGAT CTCCGCCGAC
TACGTCACGG TCATGGCCGA CGACGGCTCC CGCCAGACCT ACGGGATGCA CAAGTTCCGC
CGCTCGAACC AGGGCACCTG CATCAACCAG AAGCCCATCG TGAACGAGGG CGACCAGGTG
AAGGTGGGCC AGGTCCTCGC GGACGGCCCG TGCACCGAGA ACGGCGAGAT GGCCCTGGGC
AAGAACCTGC TCGTGGCGAT CATGCCGTGG GAGGGCCACA ACTACGAGGA CGCGATCATC
CTGTCGCAGC GCCTCGTGCA GGACGACGTC CTGACCTCGA TCCACATCGA GGAGCACGAG
ATCGACGCCC GCGACACCAA GCTGGGCGCC GAGGAGATCA CGCGGGACAT CCCGAACGTC
TCCGAGGAGG TCCTGGCCGA CCTGGACGAG CGCGGCATCA TCCGCATCGG CGCCGAGGTC
CAGCCGGGCG ACATCCTCGT CGGCAAGGTC ACGCCCAAGG GCGAGACCGA GCTGACCCCC
GAGGAGCGGC TGCTCCGCGC GATCTTCGGC GAGAAGGCGC GCGAGGTCCG CGACACCTCG
CTCAAGGTGC CGCACGGCGA GTACGGCAAG GTCATCGGCA TCCGCGTGTT CAGCCGCGAG
GACGACGACG AGCTGCCCCC CGGCGTGAAC GAGCTGGTCC GCGTGTACGT GGCCCAGAAG
CGCAAGATCC AGGACGGCGA CAAGCTCGCC GGCCGCCACG GCAACAAGGG CGTCATCGGC
AAGATCCTCC CCGTCGAGGA CATGCCCTTC CTGGAGGACG GCACCCCGGT CGACATCGTG
CTGAACACGC ACGGCGTCCC GCGTCGTATG AACATCGGCC AGGTCCTGGA GACCCACCTC
GGGTGGATCG CCAAGCAGGG CTGGAGCATC AACGGCGACC CGGACTGGGC GAAGAACCTG
CCCGCCGACC TCTACGAGGT CGACCCCGGC ACCAAGACCG CCACGCCCGT CTTCGACGGC
GCGCGCGAGG AGGAGATCAC GGGCCTGCTG GGCTCGACGG TCCCGAACCG CGACGGCGAG
CGCATGGTCA AGGAGAACGG CAAGGCGCAG CTCTTCGACG GGCGCAGCGG CGAGCCGTAC
CCCTTCCCCG TGTCGGTCGG CTACATGTAC ATCCTGAAGC TGCTGCACCT GGTGGACGAC
AAGATCCACG CGCGTTCCAC CGGCCCGTAC TCGATGATCA CGCAGCAGCC GCTGGGTGGT
AAGGCGCAGT TCGGTGGTCA GCGCTTCGGT GAGATGGAGT GCTGGGCGAT GCAGGCGTAC
GGCGCCGCCT ACACCCTGCA GGAGCTGCTC ACCATCAAGT CCGACGACGT GCTCGGCCGC
GTGAAGGTCT ACGAGGCCAT CGTCAAGGGC GAGAACATCC CGGAGCCGGG CATCCCGGAG
TCCTTCAAGG TGCTGCTCAA GGAGCTCCAG TCGCTGTGCC TCAACGTCGA GGTGCTGTCC
TCGGACGGCG CCGCGATCGA GATGCGCGAC GGCGACGACG AAGACCTGGA GCGCGCGGCC
GCGAACCTCG GCATCAACCT GTCGCGGTCC GAGTCGCCGT CCGTGGACGA CGTCGTCAAC
TGA
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| Protein sequence | MAISRATKAT AATNSTSGIP GAPKRVSFAK IHEPLQTPNL LDLQIQSFEW LTGDEAWFQR
RVDEGDEAPT GGLEEVLNEI SPIEDFSGSM SLSFSDPRFD EVKASTEECK DKDMTYAAPL
FVTAEFTNHT TGEIKSQTVF MGDFPMMTDK GTFIINGTER VVVSQLVRSP GVYYDTAIDK
TTDKDVFSVK IIPSRGAWLE FDVDKRDTVG VRIDRKRRQP VTVLLKALGW STEQIRERFS
FSETLLTTLE KDHTAGTDEA LLDIYRKLRP GEPPTKESAQ ALLETLFFKE KRYDLAKVGR
YKVNKKLGLD TPISTGVLTE DDIVTTIEYL VRLHAGETSM QPGETEVPVE VDDIDHFGNR
RLRTVGELIQ NQIRVGLSRM ERVVRERMTT QDVEAITPQT LINIRPVVAA IKEFFGTSQL
SQFMDQTNPL AGLTHKRRLS ALGPGGLSRE RAGMEVRDVH PSHYGRMCPI ETPEGPNIGL
IGSLSSYGRV NPFGFIETPY RKVVDGRVTD QIDYLTADEE DRYVKAQANA RIDGEGNFLE
GKVLVRKKGG EVEMIDPRDV DYMDVSPRQM VSAATAMIPF LEHDDANRAL MGANMQRQAV
PLLRSESPLV GTGMELRAAV DAGDVVVAKK TGVVEEISAD YVTVMADDGS RQTYGMHKFR
RSNQGTCINQ KPIVNEGDQV KVGQVLADGP CTENGEMALG KNLLVAIMPW EGHNYEDAII
LSQRLVQDDV LTSIHIEEHE IDARDTKLGA EEITRDIPNV SEEVLADLDE RGIIRIGAEV
QPGDILVGKV TPKGETELTP EERLLRAIFG EKAREVRDTS LKVPHGEYGK VIGIRVFSRE
DDDELPPGVN ELVRVYVAQK RKIQDGDKLA GRHGNKGVIG KILPVEDMPF LEDGTPVDIV
LNTHGVPRRM NIGQVLETHL GWIAKQGWSI NGDPDWAKNL PADLYEVDPG TKTATPVFDG
AREEEITGLL GSTVPNRDGE RMVKENGKAQ LFDGRSGEPY PFPVSVGYMY ILKLLHLVDD
KIHARSTGPY SMITQQPLGG KAQFGGQRFG EMECWAMQAY GAAYTLQELL TIKSDDVLGR
VKVYEAIVKG ENIPEPGIPE SFKVLLKELQ SLCLNVEVLS SDGAAIEMRD GDDEDLERAA
ANLGINLSRS ESPSVDDVVN
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