| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6464 |
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| Symbol | sdhA |
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| ID | 8330675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 7601047 |
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| End bp | 7602798 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644946892 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_003104111 |
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| Protein GI | 256380451 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.723061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTTCC ACAAGTACGA CGTCGTGATC ATCGGGGCTG GTGGCGCGGG TATGCGCGCC
GCCATCGAGT CGGGCCAGCG CGCCCGCACC GCGGTGCTCA CCAAGCTCTA CCCCACCCGG
TCCCACACGG GCGCCGCGCA GGGCGGCATG TGCGCCGCGC TGGCGAACGT GGAGGAGGAC
AACTGGGAGT GGCACACCTT CGACACGATC AAGGGCGGCG ACTACCTGGT CGACCAGGAC
GCCGCCGAGA TCATGGCGAA GGAGGCCATC GACGCGGTCC TCGACCTGGA GAAGATGGGC
CTGCCGTTCA ACCGGACGCC CGAGGGCAAG ATCGACCAGC GCCGGTTCGG CGGGCACACC
CGCAACCACG GTGAGGCCGC GGTGCGCCGC GCCTGCTACG CCGCCGACCG CACCGGTCAC
ATGATCCTGC AGACGCTGTA CCAGAACTGC GTCAAGCACG GCATCGAGTT CTACAACGAG
TTCTACGTCC TCGACATCTG CATGACCGAG ACCGAGGACG GCCCGGTCTG CACCGGCGCC
GTGGCGTACG AGCTGGCGAC CGGCGAGATC CACGTGTTCC AGGCCAAGTC GGTCGTGTTC
GCGACCGGCG GGTTCGGCAA GGTCTTCAAG ACCACCTCGA ACGCGCACAC CCTGACCGGC
GACGGCATGG GCATCGTGTT CCGCAAGGGG CTGCCGCTGG AGGACATGGA GTTCTACCAG
TTCCACCCGA CCGGTCTCGC GGGCCTGGGC ATCCTGCTCA CCGAGGGCGC GCGCGGCGAG
GGCGCGATCC TGCGCAACGC CTCCGGCGAG CGGTTCATGG AGCGCTACGC CCCCACCATC
AAGGACCTGG CGCCGCGCGA CATCGTCGCC CGGTCGATGG CCCTGGAGGT GCTGGAGGGC
CGGGGCGCGG GCCCGAACAA GGACTACGTG CTGCTGGACT GCACGCACCT GGGCGCCGAG
GTCCTGGAGA CCAAGCTGCC CGACATCACC GAGTTCGCCC GCACCTACCT GGCGGTCGAC
CCGGTGACCG AGCCGGTGCC GGTGTACCCG ACCGCGCACT ACGCGATGGG CGGCATCCCC
ACGAACGTGC TGGGCGAGGT GCTGCGGGAC AACGACAACG TGATCCCCGG CCTGTACGCC
GCCGGTGAGT GCGCGTGCGT GTCGGTGCAC GGCGCGAACC GCCTGGGCAC GAACTCGCTG
CTGGACATCA ACGTGTTCGG CCGCCGCGCG GGCATCGCCG CCGCCGAGTA CGCCCTGGCG
CACGAGCACG TGGACCTGCC GGAGAACCCG GCGGCGGGCG TCGAGGCGCA GGTGGCGCTG
GCCCTGTCCG AGCACGGCCA CGAGCGCGTC GCGGACATCC GCACCGAGCT CCAGGCCACC
ATGGACGCGA ACGCGTCGGT GTACCGCACC GAGGACACGC TCAAGACGGC GCTGAACGAC
GTGCAGGCGC TGAAGGAGCG GTACCAGCGG ATCACCGTGC AGGACAAGGG CAAGCGGTTC
AACACGGACC TGCTGGAAGC CGTCGAGCTG GGCTTCCTGC TGGAGCTGGC CGAGGTTCTG
GTCGTGGGCG CGCTCGCGCG CAAGGAGTCC AGGGGCGGGC ACGCCCGCGA GGACTACCCG
ACCCGCGACG ACACGAACTT CATGCGCCAC AGCATGTACT ACAAGCAGGG TGAGGGCCTG
TCCGCCGAGA TCAGGCTGGA CTACAAGCCC GTCACGTTCA CCCGGTACCA GCCGATGGAG
CGCAAGTACT GA
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| Protein sequence | MQFHKYDVVI IGAGGAGMRA AIESGQRART AVLTKLYPTR SHTGAAQGGM CAALANVEED
NWEWHTFDTI KGGDYLVDQD AAEIMAKEAI DAVLDLEKMG LPFNRTPEGK IDQRRFGGHT
RNHGEAAVRR ACYAADRTGH MILQTLYQNC VKHGIEFYNE FYVLDICMTE TEDGPVCTGA
VAYELATGEI HVFQAKSVVF ATGGFGKVFK TTSNAHTLTG DGMGIVFRKG LPLEDMEFYQ
FHPTGLAGLG ILLTEGARGE GAILRNASGE RFMERYAPTI KDLAPRDIVA RSMALEVLEG
RGAGPNKDYV LLDCTHLGAE VLETKLPDIT EFARTYLAVD PVTEPVPVYP TAHYAMGGIP
TNVLGEVLRD NDNVIPGLYA AGECACVSVH GANRLGTNSL LDINVFGRRA GIAAAEYALA
HEHVDLPENP AAGVEAQVAL ALSEHGHERV ADIRTELQAT MDANASVYRT EDTLKTALND
VQALKERYQR ITVQDKGKRF NTDLLEAVEL GFLLELAEVL VVGALARKES RGGHAREDYP
TRDDTNFMRH SMYYKQGEGL SAEIRLDYKP VTFTRYQPME RKY
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