| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6348 |
|---|
| Symbol | |
|---|
| ID | 8330559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 7443051 |
|---|
| End bp | 7444604 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644946777 |
|---|
| Product | cell envelope-related transcriptional attenuator |
|---|
| Protein accession | YP_003103996 |
|---|
| Protein GI | 256380336 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1316] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.352796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACGGGA GTCCGCCCGG TCGAACCGGG GGTTCGGCCG CACTGCGCGT GCTGGTCGGC
ACGGGGAGGA CGCTGGTCGC GCTCGTCTCG GCGGCCGTGC TCGTGGTGAC CTGGTACGGA
TGGCACCAGC TGCGCACCCT GAACCAGGGT GTGACGACGA CGGACGTGTT CGGCGAGGCG
TCTTCCACCG TCTCGCCCGA ATCCACGCGC AAACCCCTCG ACGGGGCGAT CGACATCCTG
CTGGTCGGCA GCGACAGCCG CACCGACGCG CAGGGCAAGC CGCTGTCCGA CGAGGTGCTG
GCGCTGCTGA ACGGCGGCGT CGACGAGGGG ACGCTGAACA CCGACACGAT CATCCTCGTG
CACGTCCCGC AGGACGGGAC GCGCGCCGTC GCGATCTCGT TCCCGCGCGA CGCGTACGTG
GAGATCGCCG ACGGGTTCGG CAAGCACAAG ATCAACTCTG CGCTGATCAG GCAGAAGAAC
ACCACCTCCG CCGAGCTCCA GGCGAAGGGG GAGACCGACC TGGCGAAGAT CGAGCTGGAG
TCGACGCTCG CCGGCCGGCG CACGCTGATC AAGACCATCG AGGACCTGTC CGGCGGCGCC
ATCAAGATCG ACCGGTACGC GGAGGTGAAC CTCGCGAGCT TCTACGAGGT CACCCAGGCC
ATCGGCGGCG TCGAGGTGTG CCTGAACAAC CCGGTGGACG ACGAGTACTA CTCCGGGGCG
AAGTTCCCGG CGGGCGTCCA GACGCTGGAG GGCAGGCAGG CGCTGCAGTT CGTGCGGCAG
CGGCACGAGC TGCCCAACGG CGACCTGGAC CGGATCGTGC GCCAGCAGGT GTTCATCGGC
GCGCTGGCCC GCAAGGTGCT CTCCACCGGC ACCCTGACCG ACCCGGCCAG GCTCAGCGGC
CTGGTCGGCG CGGTGCAGAA GTCGGTGGTG CTCAGCCAGG GCTGGGACAT CACCGAGTTC
GCCAGCCAGA TGCAGGGGCT GGCGTCGGGC AAGCTGGAGT TCCGCACCAT CCCGGTCGGG
CCGCCGACCG ACACCTACAG CGACGGCAAC GTCCTGCCGG TCGACGCGGC GGAGGTCAAG
GCGTTCCTGG GCGACCTGGC CTCGGACAAG CCGAAGCCGT CGACCTCGCC GTCGGGGTCG
CCGTCGGGGT CGCCGTCGCC GTCCGCGGGC CCGCAGCCCT CGGCGATCAC GGTGCAGGTC
TACAACTCGT CCGGGGTGTC CGGCGTCGCG CTGAAGGTGC TGAACGCGCT CGGCGATCAG
GGCTTCCGCA AGGGGCAGGC GCTCAACTCG GCGGTCAGCG ACACCACCGT GGTCCGGTAC
GGCACGGGCC AGGAGGCGTA CGCGGACCGG GTGGTCCAGG CGCTCGGCGG TAACGCCACG
ACCGAGCTGG ACGACTCCGT GCCGAGGGGT CAGGTGTTGA TCTACGTGGG CGCCGACAAC
GCGGAGCTGG GCACGACCGA CGACACGTCG TCGGCGCGCT CGGAGACCGG GTCGTCCAGC
CCGGCGAGCA GCGCCGCGCC CATCACGGCC AACGGCGTGG TCTGCGTGGA CTGA
|
|---|
| Protein sequence | MDGSPPGRTG GSAALRVLVG TGRTLVALVS AAVLVVTWYG WHQLRTLNQG VTTTDVFGEA
SSTVSPESTR KPLDGAIDIL LVGSDSRTDA QGKPLSDEVL ALLNGGVDEG TLNTDTIILV
HVPQDGTRAV AISFPRDAYV EIADGFGKHK INSALIRQKN TTSAELQAKG ETDLAKIELE
STLAGRRTLI KTIEDLSGGA IKIDRYAEVN LASFYEVTQA IGGVEVCLNN PVDDEYYSGA
KFPAGVQTLE GRQALQFVRQ RHELPNGDLD RIVRQQVFIG ALARKVLSTG TLTDPARLSG
LVGAVQKSVV LSQGWDITEF ASQMQGLASG KLEFRTIPVG PPTDTYSDGN VLPVDAAEVK
AFLGDLASDK PKPSTSPSGS PSGSPSPSAG PQPSAITVQV YNSSGVSGVA LKVLNALGDQ
GFRKGQALNS AVSDTTVVRY GTGQEAYADR VVQALGGNAT TELDDSVPRG QVLIYVGADN
AELGTTDDTS SARSETGSSS PASSAAPITA NGVVCVD
|
|---|
| |