| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6305 |
|---|
| Symbol | |
|---|
| ID | 8330516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 7391532 |
|---|
| End bp | 7394459 |
|---|
| Gene Length | 2928 bp |
|---|
| Protein Length | 975 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644946736 |
|---|
| Product | preprotein translocase subunit SecA |
|---|
| Protein accession | YP_003103955 |
|---|
| Protein GI | 256380295 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0507355 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCTGT CCCGACTGCT CCGCGCAGGC GAAGGCAAGA TGCTCAAGCG CCTGCGCAAC
ATCGCAGCGC ACATCAACAA CCTCGAAGAC GACGTCGTCG ACCTCTCCGA CGCCGACCTC
AGGGCCAAGA CCGAGGAGTT CCGCAAGCGC CACGCCGACG GCGAGTCGCT CGACGAGCTG
CTGCCGGAGG CGTTCGCCGT CGTCCGCGAG GGCGCGAAGC GGGTGCTCGG CCAGCGGCAC
TTCGACGTCC AGCTGATGGG CGGCGCGGCG CTGCACCTCG GGCAGATCTC CGAGATGCGC
ACCGGTGAGG GCAAGACCCT GACCTCGGTG CTGCCCGCCT ACCTGAACGC GATCGCGGGC
AAGGGCGTGC ACGTCGTCAC GACCAACGAC TACCTCGCCA AGCGCGACTC GGAGTGGATG
GGCCGCATCC ACCGCTTCCT CGGCATGACC GTCGGCGCGA TCCTGTCCGA CATGACGCCG
GAGCAGCGGC GCGCGGCCTA CAACGCCGAC ATCACCTACG GCACGAACAA CGAGTTCGGC
TTCGACTACC TGCGCGACAA CATGGCGTGG AGCCTGGACG AGTGCGTGCA GCGCGGCCAC
TTCTTCGCCG TGGTCGACGA GGTCGACTCG ATCCTCATCG ACGAGGCCCG CACGCCGCTG
ATCATCTCCG GCCCGGCCGA CCAGTCGTCG CGCTGGTACC TGGAGTTCGC CCGCCTGTCC
ACGCTGCTGC GCAAGGACAC CCACTACGAG ATCGACGAGC GCAAGCGCAC CGTCGGCGTC
TCGGAGACCG GTGTCGCCTT CATCGAGGAC CAGCTCGGCA TCGAGAACCT CTACGAGGCG
GCGAACACCC CGCTGGTCGG CTACCTGAAC AACGCCATCA AGGCGAAGGA GCTGTTCAGC
AAGGACAAGG ACTACATCGT CCGCAACGGT GAAGTCATGA TCGTCGACGA GTTCACCGGC
CGCGTGCTCT CGGGCCGCCG CTACAACGAG GGTATGCACC AGGCGATCGA GGCCAAGGAG
GGGGTGGAGA TCAAGGCCGA GAACCAGACC CTCGCCACGA TCACCCTCCA GAACTACTTC
CGCCTCTACG AGCGCATGGG CGGCATGACC GGCACCGCCG AGACCGAGGC CGCGGAGTTC
TACCAGACCT ACAAGCTCGG CGTGGTCCCC ATCCCGACCA ACCGCCCGAT GAAGCGCCGC
GACCAGCCGG ACCTGGTCTA CAAGTCCGAG GAGGCGAAGT TCCAGGCGGT CGCCGAGGAC
ATCGCCGAGC GGCACGAGAA GGGCCAGCCG GTCCTGGTCG GCACGACCAG CGTCGAGCGC
TCCGAGTACC TGTCGAAGCT GCTGGTGCGG ATGAACATCC CGCACGAGGT CCTCAACGCC
AAGCACCACG ACCGCGAGGC GCTGATCATC GCCCGCGCCG GTCGCAAGGG CGCGGTCACC
GTCGCGACGA ACATGGCCGG TCGAGGCACC GACATCGTGC TCGGCGGCAA CCCGGACATC
CTGGCCGACC ACGAGCTGCG CGACCGCGGC CTCGACCCGG TGGAGAACGT CGACGAGTAC
CAGGCGGCCT GGTCGAAGCT GATCGAGGAC GTCAAGGCCG AGGTCAAGGC CGAGAGCGAG
GCGGTCCGCG ACGCGGGCGG CCTGTACGTG CTCGGCACCG AGCGCCACGA GTCCCGCCGC
ATCGACAACC AGCTGCGCGG CCGCTCCGGC CGCCAGGGCG ACCCCGGCGA GTCCCGGTTC
TACCTGTCGC TGCGCGACGA GCTGATGCGC CGGTTCAACG CGGCCATGGT CGAGAACGTG
ATGACCCGCC TGAAGGTGCC GGACGAGCTG CCCATCGAGC ACAAGTGGGT CACCAACGCG
ATCCGCAGCG CGCAGACCCA GGTCGAGCAG CAGAACTTCG AGATCCGCAA GAACGTCCTC
AAGTACGACG AGGTCATGAA CGAGCAGCGC AAGGTGATCT ACGCCGAGCG CCACCGCGTC
CTCGCGGGCG AGGACCTGCG CGAGCAGGTC ACCCACATGA TCAAGGACGT CACCGGCGAG
TACGTCGACG GCGCCACCGC CGACGGCTAC TCCGAGGACT GGGACCTCGA CAAGCTGTGG
ACGGCCCTCA AGACGCTCTA CCCGGTGTCG CTGGACGCCA AGGCGCTGCT CGACGCCGAG
GACGACCTCA GCCGCGAGGA CCTGCGCGCC CGCGTGCAGG AGGACGCGCT GGAGGCGTAC
GGCAACCGCG AGGCCGACAT CGACGGCCGC GTCGGCCCCG GCGCCATGCG CGAGCTGGAG
CGCCGCGTGC TGCTGTCCGT GCTCGACCGC AAGTGGCGCG AGCACCTCTA CGAGATGGAC
TACCTCAAGG AGGGCATCGG CCTGCGGGCG ATGGCCCAGC GCGACCCGCT GATCGAGTAC
CAGCGGGAGG GCTTCGACAT GTTCAACGGC ATGTTGGAGG CGCTGAAGGA GGAGATCGTC
GGCTTCCTGT TCAACCTGCA GGTCGAGGCC GCCGAGCCCG AGCCCGCCCC GGAGCCCCCG
GTGCAGGTGT CGATCAGCAA CGGCGCGGGC AACCTGACCG GCAGCCGCGC CCGCGCGCGC
GCCGCCGCGG CGGCCCAGGC CGAGGCGCAG CAGCAGGCCC AGGTCCAGGC CCAGCAGCAG
GCGGCGGCGG CCAGGCAGCA GGAGGAGCAG CGCCGACGCG AGGCCCCGGC GGGCTCCGCG
CTGGCGCAGC TGTCGGGCGC CCCGATCCCG GCCGCGCTGC GCGGCAAGGG CCTCGACCCG
CGCGCGAACA CGAACCTGAC CTACACCGGT CCGGACGAGA GCGGCGACGC GGAGTCCCAC
GGCAGCGCCA ACCAGGGCGG CGGCGCAGGC CAGGGCGGCA CCCGCAAGGA GCGCCGCGCC
CAGGCCCGCG CCCAGGCCAA GGGCCAGCGC AACCGCCCGC AGGGCTGA
|
|---|
| Protein sequence | MVLSRLLRAG EGKMLKRLRN IAAHINNLED DVVDLSDADL RAKTEEFRKR HADGESLDEL
LPEAFAVVRE GAKRVLGQRH FDVQLMGGAA LHLGQISEMR TGEGKTLTSV LPAYLNAIAG
KGVHVVTTND YLAKRDSEWM GRIHRFLGMT VGAILSDMTP EQRRAAYNAD ITYGTNNEFG
FDYLRDNMAW SLDECVQRGH FFAVVDEVDS ILIDEARTPL IISGPADQSS RWYLEFARLS
TLLRKDTHYE IDERKRTVGV SETGVAFIED QLGIENLYEA ANTPLVGYLN NAIKAKELFS
KDKDYIVRNG EVMIVDEFTG RVLSGRRYNE GMHQAIEAKE GVEIKAENQT LATITLQNYF
RLYERMGGMT GTAETEAAEF YQTYKLGVVP IPTNRPMKRR DQPDLVYKSE EAKFQAVAED
IAERHEKGQP VLVGTTSVER SEYLSKLLVR MNIPHEVLNA KHHDREALII ARAGRKGAVT
VATNMAGRGT DIVLGGNPDI LADHELRDRG LDPVENVDEY QAAWSKLIED VKAEVKAESE
AVRDAGGLYV LGTERHESRR IDNQLRGRSG RQGDPGESRF YLSLRDELMR RFNAAMVENV
MTRLKVPDEL PIEHKWVTNA IRSAQTQVEQ QNFEIRKNVL KYDEVMNEQR KVIYAERHRV
LAGEDLREQV THMIKDVTGE YVDGATADGY SEDWDLDKLW TALKTLYPVS LDAKALLDAE
DDLSREDLRA RVQEDALEAY GNREADIDGR VGPGAMRELE RRVLLSVLDR KWREHLYEMD
YLKEGIGLRA MAQRDPLIEY QREGFDMFNG MLEALKEEIV GFLFNLQVEA AEPEPAPEPP
VQVSISNGAG NLTGSRARAR AAAAAQAEAQ QQAQVQAQQQ AAAARQQEEQ RRREAPAGSA
LAQLSGAPIP AALRGKGLDP RANTNLTYTG PDESGDAESH GSANQGGGAG QGGTRKERRA
QARAQAKGQR NRPQG
|
|---|
| |