| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6164 |
|---|
| Symbol | |
|---|
| ID | 8330375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 7223880 |
|---|
| End bp | 7225718 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644946598 |
|---|
| Product | glycoside hydrolase family 5 |
|---|
| Protein accession | YP_003103817 |
|---|
| Protein GI | 256380157 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.791591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCA CCCCGCTCCT GGCCGCACTG CTCCTGCTGC TCGCGCCCGC CCCGCTCCCC
GCCCCCGCCG CCCCCGCCGC GTCCGCGTGG TTCGACGGCG GCGAGGTCAG ACCGGTCGGC
GGGGCCTTCC GGGACGAGCA CGGGCGCGAG GTGGTGCTGC GGGGCTTCAA CGTCTCCGGC
ACCGCCAAGC TCGCCGAGTA CCGGGGGCTG CCGTTCCCGA ACGTCCAGGC CGCGCGGGAC
TCCGCCGCGG CGCTGCGCAG GTTGACCGGC GCCAACGCGG TCCGGTTCCT GGTCACCTGG
GCGTGGTTGG AGCCGGAGCC GAGGCGGATC GACCAGGCGT ACCTGGACCG GGTCGCCGAG
CAGGTGGGGG CGTTCACGGA CCAGGGCGTG CGGGTGTACG TGGACTTCCA CCAGGACCTG
TACTCGCGGC ACGTGTTCAA CCGGGACAGC TGGTACACCG GTGACGGCGC GCCCGCGTGG
GTGGTGCGCG CGGGCGGGTA CCCGGCCGAG TCGTGCGGGT TGTGCTTCCA CTGGGGGCAG
AACATGAAGT CGAACACGGC CGTCACCGCC GCGACCTACG ACTTCTGGCA CAACCGCGAG
CTCCAGGTGG ACGGGGGACC GCTGCGCGTG CAGGACGAGT TCCTGAGCGC GGCGGGGGAA
GCGTTGCGGG GCTTGAGGAA CCGGCTGTCC GCCGAGGCGT TCGAGCTGGT GCTGGGCGTG
GACCCGCTGA ACGAGCCGTA CGCCGGCCGC TACGACGCGG GCCAGACCGG CCTGACGTGG
GAGCGCGACC ACCTGTGGCC GTTCCACCAG CGGTTCCGGC GGCTCATGGA CGAGACGGGC
TGGCGGGACA AGACGTCCTT CGCCGAACCG CTGGTGTTCT GGAACCAGAA CGTGGACTTC
TTCGCCGAGC CGGGCGGTTT CCCCGGCGCC GCGCCGTGGG GCGACGGGTA CGCGTTCAAC
ACGCACTTCT ACGACGGCAA GGCCCAGTCC GGGCTGCTGA TGCCGGGGAA GGCGGGGGAC
GGGCAGTACG CGCGGACGTT CGCGGACGTG CGGACGCGCG CGGCGGAACT GGGCACGCCC
GCGATCGTCT CCGAGTACGG CCACCCGGTG CGGGGGTTGA CGGCGGACAA GTACCCGTCG
GTGCTGAAGG CGACGCAGCA GTCGCTGGAC AGCGCGCTGC CGGGGTCGCG GTGGTGGGCC
GAGGCGGCGA CGTCCGGGCC GGTGCTGTCG GGGAGCCAGT GGCACTGGGA CACGAACTAC
GACCGGCACC GGGAGTACAT GAACGACAAC CCCGCCAAGC TCAAGACGGA CGGCGACGCG
ATGAACGACG AGCACTTCTC GGTGGTGCGG GTCGGCGACG ACGGCGCGGC GGGGCTGACG
GTGGACGCGC GACTGGTGGA CCGGGTGTTC CCGCGCGCGG TGGCGGGGAC GACGCGGGCG
TTCACGTACG AGGACCGGGC GCGGGACGGG AACGCTGAGC TGGTGTGGAA CCAGGTGCCT
GCGGGGATGC CCGCGGTGCG GGGGCTGGTG GGGACCAGCC CGTACGCGGT GCTGGTGTGG
GAGGGGGCGG AGTCGGGGGC GCCTACGGAG CTGCACCTGC CTGCGGGGTT CACGCCGCAG
GGGACTTCGG TGGTGAGCGA CCTGGGGGTG GTTCGGGGGG TGCCTTCGGA CACGGGCGTG
GAGGCGGTGT CGTGGGGGCC GGAGCCTGGG GTCGGTGGGG TCAACCGGGT GCTGCTGAGG
GCGGGGGCGG GGGTGCACTT CGCGCTGGTG ACCACCGGTG CGGGGGACTT GGCGGCGGCG
CGGGCGGAGT TGTCGAGGTG GGCGTCGGGG ACGTTCTGA
|
|---|
| Protein sequence | MRRTPLLAAL LLLLAPAPLP APAAPAASAW FDGGEVRPVG GAFRDEHGRE VVLRGFNVSG
TAKLAEYRGL PFPNVQAARD SAAALRRLTG ANAVRFLVTW AWLEPEPRRI DQAYLDRVAE
QVGAFTDQGV RVYVDFHQDL YSRHVFNRDS WYTGDGAPAW VVRAGGYPAE SCGLCFHWGQ
NMKSNTAVTA ATYDFWHNRE LQVDGGPLRV QDEFLSAAGE ALRGLRNRLS AEAFELVLGV
DPLNEPYAGR YDAGQTGLTW ERDHLWPFHQ RFRRLMDETG WRDKTSFAEP LVFWNQNVDF
FAEPGGFPGA APWGDGYAFN THFYDGKAQS GLLMPGKAGD GQYARTFADV RTRAAELGTP
AIVSEYGHPV RGLTADKYPS VLKATQQSLD SALPGSRWWA EAATSGPVLS GSQWHWDTNY
DRHREYMNDN PAKLKTDGDA MNDEHFSVVR VGDDGAAGLT VDARLVDRVF PRAVAGTTRA
FTYEDRARDG NAELVWNQVP AGMPAVRGLV GTSPYAVLVW EGAESGAPTE LHLPAGFTPQ
GTSVVSDLGV VRGVPSDTGV EAVSWGPEPG VGGVNRVLLR AGAGVHFALV TTGAGDLAAA
RAELSRWASG TF
|
|---|
| |