| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5159 |
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| Symbol | |
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| ID | 8329361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 6147996 |
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| End bp | 6151958 |
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| Gene Length | 3963 bp |
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| Protein Length | 1320 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 644945598 |
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| Product | Patatin |
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| Protein accession | YP_003102826 |
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| Protein GI | 256379166 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03607] patatin-related protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.51871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGCTG GCTCGGAGCA GAACGCGCAG TCCGGGGCCG GGGGAATCCC GAAGGAGCAG
GTCCGCTTCG CGGTGGTGCT CAACGGCGGG GTGAGCCTGG CCGTGTGGAT GGGCGGCTCG
GTGCTGGAGG TGGACCGGCT CACCCGCGGC TCGGGCCCCT ACCGGCACCT GCTCGGCATG
GTCGGCGCGA CCGCCCGCGC CGACGTCATC ACCGGCACCT CGGCGGGCGG CATCAACGGG
GCCGCGCTCG CGCTGTCGCA GGTCAACGAG GCCGCGAAGC TGGAGCGGCT GCGGGACCTG
TGGTCCGAGC AGGGCCGCAT GGAGCAGCTG CTGCGCACCC CGTTCCAGGG CGCCCCGGTG
TCGCTGCTGC GCGGCGACGA GTTCTTCCTG CCCCGGCTGC ACGAGGCCCT CGAACGCCTC
ACCGACGACT ACCGGCCGCT GCCCGCGCAC GAGCGCCCGG TGGACCTGCG GATCACCACG
ACCCTGCTCA CCGGGGTGCC GTCGGTGACC TACGACGACC TCGGCGAGGC CCTGGTCCAG
TCCAGCCACC AGGGCAGCTT CTCGTTCCGG CGTGACCCGT ACGGGTGGGC GAGGCCCGCA
GGGGAGACCG CGCAGGAGCG CCCGCGCGAC GACTTCGCCC CGACCGAGCT GGACCGGCTC
ATCCCCCGGA TGGCGCTGGC CGCGCGCTCG TCGGCGTCGT TCCCGTTCGC GTTCGAGCCC
TCGCGGGTGC CGGTCAACGG CGGCGGCCCG GTCGACATGG CGGGCGTGGC CTCGTGGACC
GACGGCGACC GCGACCTGTC CCGGTACGCG GTGGACGGCG GCGTGCTGGT CAACACCCCC
ACCAGGGAGG CGCTGGAGGC GATCGACCGG ATGCCCGCCG AGGGCCCGGT GCGGCGGGTG
ATGCTGCTGG TGTTCCCGCA CGCGCCCGGC GCTCCCGAGG GCGCGGCGTC CGCCGAGCTC
GGCCCGCCCA CGGCGGTCGG CGCCAGTGGG CAGCTGCTGG GCGCGCTGAC CAGCCAGAGC
GGGCGCACCT ACGTGGAGCG CATCGAGGAG CACAACCGGC GGGCCGCGAC CCGGCGCGGC
GGGCGTGGCG CGCTGCTGTC CCGGCTGCAC CGCGAGGGCG CGCCGATCAC GCGCAGCCTG
TACGAGCTGA CCAGGACCCT GCGCGGGCAC TACGAGGACG TGCGCATCCG GCTGGCCGCC
CGCGACCTGG CCACCCGCGA GCTGGACAAG CCCGGCTCGA ACGCGGCGGG CTGGACGTTC
GAGCGGGTGC GGGCCGCCGC CGAGGTCGCG CAGCGGACCT GGCTGCGCGA GCACGGCAGC
CTGCCGTACG TGCCGGTGCC GCCGCTGCCG GTCGCCGCGC CGGTCACCGG CTGGCCGTGG
GGCATCTCGA TGGCCGAGCG GCTGGTCACC GCGGCGATGG ACCTGCTCAA GCGGCTGGTG
TGGGTGGTGC CCGCCGAGGG GCCGGGCCTG GCGGACTGCG CGCGGATCAC CGGCGACCGG
ACCGTGCTGC ACCGGGTGCG GGCCGAGCTG CGCAGGCTGC ACGAGGAGCT GGACTCGGAG
CAGGTGCGGG CGGGCGTGGA GGCGCGGGTG CGGGCCGGGC TGCGGCTGCC CGACGACCGG
CCGGTCGAGC TGAACCAGGT GTACTGGCGG GAGCGGCTGC AGAACTTCAC CGAGCGGATG
GGCGCGGACT CGGAGGAGGA GCTCGGGCAG CGGGTGCGGG CTCAGGTGGC GCTGGTCGCC
GAGGTGCTCG GGCACGCGCA CGCGATCATC ACCGGGCTCA GCCCGGAGCG GCGGTCGATG
GTCGGGCTGG AGCCGTGGTG CCTGCTGCTG ACCGAGCCGA TCACCGGGGG CGAGTCCGAG
GTGGGGCTGG TCGGGGACGA CGTGTGGCTG TCCCGGCTGC TCGCGCTGGA GGTGGCCACG
ACGTGCCTGG CCGACGACTC GATCAGCGGG CTCGACCAGG CCGTGGAGCT GGTGCAGGTC
AGCCTGCGCA CCCGCAACGC GTTCGCCGAC TACAGCCGCA CCCCCGACGA CAAGGCGGGC
GGGGCGTCGC TGAGCCGGTT CTCCGGGTTC CTCAAGCGGT CCTGGCGGGT CAACGACTGG
ATCTGGGGCA GGCTCGACGG GGCGTCGATG CTGTGCCGGG TGCTGTTCGA GCCGACCAGG
CTGCGGCGGG TCGACAAGCT CGCGGGCGGG CTGCCCGGTG ACGCCGCGCA GCGCGCCGAG
GCGGTGGTGG CGGACCTGGT GGCGGAGCTG TTCGGCAGCG CCCTGCCGGA GGAGCTGCGG
GCGGCGCGGG AGGCGGCGGT GGCCGAGCTG ACCGGGGTGT ACGCCTCCGG CGAGTCCGAC
CTGCCGCCCA CCTGCGCGGC GCTCGCGGAC CTGGCCGCGT GGGGGCTGCA CGCGCGGATC
ATCTGCGAGG AGCTGCCCGC GCTGCGGCAG GCGATCCTGG CCGACCGGGC GGACGGGGCG
GACCGGCGCT CGCGCGGCGA GCTGTTCCTG GAGGAGCACG CCGGGCTGCT GGCCAGGCTC
GCCACGCCGC CGATCACCAC CGAGGAGACG GCGGCGCTGG GCGTGCTGGC GCTGCGCGCG
TTCGACCGGG CGGGCATCGG CCGCGAGCCG ATCAGCCAGG AGGCGGGCAG CGACCAGGTG
ATCCGCACGG CGGCGACGGC GGCGGCGGTC GCGGTGACCG TGGCCGACAG CGACCGCTCG
GGGCTGGGGC CGGTGAAGCC GCTGACCAGG GCGCTGCGCG GGGCGGCGCT GCTGCCCTAC
TGGATGATCA ACGGTCTGAC CAGGGGCGGG AACCTGTCGA GGTTCCTGGG GCTGGTCGGG
CTGGCGCTGG GCGGGGCGCT GCTGGTGCTG TCGCTGTTCG GCCTGCTTCC CGGCTGGGCG
GTGGCCCCGG CGGCGGCGCT GGGGGCGGCG ACGCTGCTGG CCGCGTTCGG GTACGCCGCG
CTGCGGTCCG GGACGCTGCT GCACGGGCTG GTGCTGCTGT CGCCGGTGCT GCCGCTCGCG
TCGGTGGCGG TGCTGCGGTC GCGGGTGGCG CTGGGGAGCG GCACGAACCC GCAGGAGGCC
ACCACCGGGG TCGTCGCGAT CGCCGGGGTG GGGCTGGTCG TGGCGTGCCT GCTGGCGCTG
GGCAGCCTGC CGTCGCCGGT GGGCACGCCG CTGGCGGTGC TCAAGCGGGT GCGGGTGCCG
AAGCGGCTGG TGGGGGTGCT CGCGGCGGCC TCGCTGCTGT GGCTGGGCGT GCGGGAGGTC
GTGGCGCGCA GGCTGTACGA GGTGGACTGG CGGGTCGCGG CGCTGGCGTC GCTGGTGGCG
GTGGCGATCG GGTTCGGGGC GTCGTTCGCG CTGGGGCGGT CGATGCAGCG GTGGCGGCGG
GCCGAGGACG TGGGAGCGGT GGACGCGGCG GGCTCCGGGT CACCGGGGGT TGGGGCCGTC
GGGGTGGGGG CCGTCGGGGT GGGGGCCGTC GGGGTTGGAG CGCGGGACGC GGGGGCCGCC
GGGGCCGGGC CGTCCGACGC GGGGACGCCG TGGGTGACCG AGCACGCCGA GCCGCCCTCG
GCGGCGACCG CCGGGTGGGC CGGGGTGTAC GGCACCGGCT ACCTGGCGCT GGTGGTGCTG
ATGCGGGCGC TGGACCTGCG GTTCACCGGC TGGGAGGCGG TGCTGTGCAC CGGGGCCGGG
TTCGGGGCGG TGCTGCTGCT GGTCACCACC TGGTGGGTGC CGCTGCGCGG CAGGGCCCGC
ATCCTCGCCG ACATCGAGGA CCAGTCCGTG CTCGCCGGGG TGCCCGACGA GGCGGCGTTC
CTGCGCAGGC TGGAGGGGCA CGGCGGGCTG TTCCGGTTCC TGGTGGGGGT GCGGGACGGC
CACCCGGTGC TCAGGCCCGC CGGGAAGCGG GCCGCGCGCC GGGTGGCCGA CCGGGTCTCC
CGCGCTCAGG CGGCGAGCGC GGCGGGCGCG GCTGCCGTGG CCGAGCCCAT CGCCTCGGCG
TAG
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| Protein sequence | MSAGSEQNAQ SGAGGIPKEQ VRFAVVLNGG VSLAVWMGGS VLEVDRLTRG SGPYRHLLGM
VGATARADVI TGTSAGGING AALALSQVNE AAKLERLRDL WSEQGRMEQL LRTPFQGAPV
SLLRGDEFFL PRLHEALERL TDDYRPLPAH ERPVDLRITT TLLTGVPSVT YDDLGEALVQ
SSHQGSFSFR RDPYGWARPA GETAQERPRD DFAPTELDRL IPRMALAARS SASFPFAFEP
SRVPVNGGGP VDMAGVASWT DGDRDLSRYA VDGGVLVNTP TREALEAIDR MPAEGPVRRV
MLLVFPHAPG APEGAASAEL GPPTAVGASG QLLGALTSQS GRTYVERIEE HNRRAATRRG
GRGALLSRLH REGAPITRSL YELTRTLRGH YEDVRIRLAA RDLATRELDK PGSNAAGWTF
ERVRAAAEVA QRTWLREHGS LPYVPVPPLP VAAPVTGWPW GISMAERLVT AAMDLLKRLV
WVVPAEGPGL ADCARITGDR TVLHRVRAEL RRLHEELDSE QVRAGVEARV RAGLRLPDDR
PVELNQVYWR ERLQNFTERM GADSEEELGQ RVRAQVALVA EVLGHAHAII TGLSPERRSM
VGLEPWCLLL TEPITGGESE VGLVGDDVWL SRLLALEVAT TCLADDSISG LDQAVELVQV
SLRTRNAFAD YSRTPDDKAG GASLSRFSGF LKRSWRVNDW IWGRLDGASM LCRVLFEPTR
LRRVDKLAGG LPGDAAQRAE AVVADLVAEL FGSALPEELR AAREAAVAEL TGVYASGESD
LPPTCAALAD LAAWGLHARI ICEELPALRQ AILADRADGA DRRSRGELFL EEHAGLLARL
ATPPITTEET AALGVLALRA FDRAGIGREP ISQEAGSDQV IRTAATAAAV AVTVADSDRS
GLGPVKPLTR ALRGAALLPY WMINGLTRGG NLSRFLGLVG LALGGALLVL SLFGLLPGWA
VAPAAALGAA TLLAAFGYAA LRSGTLLHGL VLLSPVLPLA SVAVLRSRVA LGSGTNPQEA
TTGVVAIAGV GLVVACLLAL GSLPSPVGTP LAVLKRVRVP KRLVGVLAAA SLLWLGVREV
VARRLYEVDW RVAALASLVA VAIGFGASFA LGRSMQRWRR AEDVGAVDAA GSGSPGVGAV
GVGAVGVGAV GVGARDAGAA GAGPSDAGTP WVTEHAEPPS AATAGWAGVY GTGYLALVVL
MRALDLRFTG WEAVLCTGAG FGAVLLLVTT WWVPLRGRAR ILADIEDQSV LAGVPDEAAF
LRRLEGHGGL FRFLVGVRDG HPVLRPAGKR AARRVADRVS RAQAASAAGA AAVAEPIASA
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