Gene Amir_4396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4396 
Symbol 
ID8328593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp5194084 
End bp5194773 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content74% 
IMG OID644944858 
ProductThiJ/PfpI domain protein 
Protein accessionYP_003102091 
Protein GI256378431 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.817185 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACATCC TCATCGTGCT CACCTCCCAC GACCGGCTCG GCGACACCGG CAAGCCCACC 
GGCTTCTGGC TGGAGGAGCT CGCCGCGCCC TACTACCGGT TCAAGGACGC GGGCGCCCGG 
CTCACCCTCG CCTCGCCCAA GGGCGGTCAG CCGCCGCTCG ACCCCAAGAG CAACGAGCCC 
GACAGCCAGA CCGACGACAC CCGCCGGTTC GAGGCCGACG CCGAGGCCAC CGCCGCGCTC 
GCGAGCACCG TCGAGCTGGG CTCCGTCGAC CCCGCCGACT ACGACGCCGT CTTCTACCCC 
GGCGGCCACG GCCCCCTCTG GGACCTCGCC GAGGACGCCG ACTCGCTGCG CGTCATCCAG 
GAAACCCACC GCGCGGGCAA GCCCCTCGCG CTGGTCTGCC ACGCCCCCGG CGTCCTGCGC 
CACGCCGTCG ACGCCGACGG GCAGCCGCTG GTCAAGGGCA AGCGCGTCAC CGGGTTCACC 
AACACCGAGG AGGACGGCGT CGGCCTGACC GAGGTCGTGC CGTTCCTGGT CGAGGACGTG 
CTCAAGGCGG GCGGCGGCGA CTACTCCAAG GGCCCCGACT GGGCGCCCTA CGTCGTGCGC 
GAGGGCCTGC TGGTGACCGG CCAGAACCCG GCCTCCTCCG CGCCCGCCGC CGACGCCCTG 
CTCGACCTGC TGCCCGCGCG CAACGGGTGA
 
Protein sequence
MNILIVLTSH DRLGDTGKPT GFWLEELAAP YYRFKDAGAR LTLASPKGGQ PPLDPKSNEP 
DSQTDDTRRF EADAEATAAL ASTVELGSVD PADYDAVFYP GGHGPLWDLA EDADSLRVIQ 
ETHRAGKPLA LVCHAPGVLR HAVDADGQPL VKGKRVTGFT NTEEDGVGLT EVVPFLVEDV 
LKAGGGDYSK GPDWAPYVVR EGLLVTGQNP ASSAPAADAL LDLLPARNG