| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4251 |
|---|
| Symbol | |
|---|
| ID | 8328444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 5009351 |
|---|
| End bp | 5010694 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644944715 |
|---|
| Product | oxidoreductase, short chain dehydrogenase/reductase family |
|---|
| Protein accession | YP_003101952 |
|---|
| Protein GI | 256378292 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.044314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACGACG AGTTCGACGA GGCGGCCTTC CACGCCGCCC TCGCCCGCCT GCGCGCCCTC
CCCGAGGACG ACCCGGCCCG CCTGCGGGCC GAGCGCGCCG CCGAGTCCCT GGTCCGCGAC
GGCAAGCAGC GCCGCCGCAG GGCCAGGGGC GCCCGCCACG CCGCCGCCGA CGCGCGGACC
AGCGCCACCA CCGCCACCGG CGCCGCCGAC CGCCGGGAGG ACGCCCCGCT GCCCGCCGTC
CCGGACGCCG AACCGCGCCC GCTGCACCGG TCCCGCCGCT GTTACGTCTG CAAGCGGCCC
TACCGCCTCG CCGACGCCTT CTACCACCTG CTGTGCCCCG ACTGCGCCGC CGACAACACC
CGCCGCCGCA CCGCCTCCAC CGACCTCACC GGCCGCCGCG CGCTGCTCAC CGGCGGTCGC
GTCAAGATCG GCTTCCAGCT CGCCCTGATG CTGCTGCGCG ACGGCGCCGA CCTGGTCGTC
ACCACCCGCT TCCCCCGCGA CGCCGCCCGC CGCTTCGCCC AGGCCGAGGG AAGCGCCGAC
TGGCTGCACC GCCTCACCGT CGTCGGCGTC GACCTGCGCG ACCCGCGCCA GGTGCTCGGC
CTGTGCCAGG AGCTGCGCTC GGACGGCGCC CCGCTCGACA TCCTGATCAA CAACGCCGCG
CAGACCGTCC GCCGCCCGCC CGAGGCGTAC GCCCCGCTCA CCGCCGCCGA GACCGGCCCG
CTGCCGCCCG GCGTCCGGCT CGCCCCCGGC TACCGCGCCG CGCTCCCGGC CGACCGGGGC
CGGGCCGCGC TGGAGCTGGT GCTGGCCGAC CGCGCCACCC CGGTCCGGCT GGACGAGGCG
GGCCTGGTCC CGGACACCGC GCCCGCGAAC TCCTGGTCCG CGCGCCTCGG GGAGCTGGAC
CCCGCCGAGG TCCTGGAGAC CCAGCTCGTC AACGCCTTCG CCCCCGCCCT GCTGTGCGAC
CGCCTGCTGC CGCTCCTGCT CGCCTCACCG GCCCCGCGCC GCTACGTCGT CAACGTCACC
GCCGTGGAGG GCCGCTTCGA GGTCCGCAAC AAGACCTCCG GCCACCCGCA CACCAACATG
GCCAAGGCCG CGCTGAACAT GCTCACCCGC ACCAGCGGCC CCGACCTCGC CCGCCAGGGC
GTGCACATGT GCGCCGTCGA CACCGGCTGG GTCACCGACG AGAACCCCGC GCCCAAGAAG
GAGCACCTGG CGCGGCAGGG CTTCCGCACC CCGCTGGACG TGGTCGACGG CGCCGCCCGC
GTCTACGACC CGATCGTCCG GGGCGAGGCG GGCGACCCGG TCTCCGGCGT CTTCCTCAAG
GACTACCGCG AAGCCGCCTG GTAG
|
|---|
| Protein sequence | MHDEFDEAAF HAALARLRAL PEDDPARLRA ERAAESLVRD GKQRRRRARG ARHAAADART
SATTATGAAD RREDAPLPAV PDAEPRPLHR SRRCYVCKRP YRLADAFYHL LCPDCAADNT
RRRTASTDLT GRRALLTGGR VKIGFQLALM LLRDGADLVV TTRFPRDAAR RFAQAEGSAD
WLHRLTVVGV DLRDPRQVLG LCQELRSDGA PLDILINNAA QTVRRPPEAY APLTAAETGP
LPPGVRLAPG YRAALPADRG RAALELVLAD RATPVRLDEA GLVPDTAPAN SWSARLGELD
PAEVLETQLV NAFAPALLCD RLLPLLLASP APRRYVVNVT AVEGRFEVRN KTSGHPHTNM
AKAALNMLTR TSGPDLARQG VHMCAVDTGW VTDENPAPKK EHLARQGFRT PLDVVDGAAR
VYDPIVRGEA GDPVSGVFLK DYREAAW
|
|---|
| |