Gene Amir_4237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4237 
Symbol 
ID8328430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp4989937 
End bp4990638 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content67% 
IMG OID644944701 
ProductEndo-1,4-beta-xylanase 
Protein accessionYP_003101938 
Protein GI256378278 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.494752 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGAAG CAGCCGACGC AGCGGCGGGC GGGCAGCACC GGATCGGCCG CAGGCTGTTC 
CTGGGCGGAG CGGGCGCGAC CGTGCTGGGG GCGGCCTCCG GGCTCGTGCT CCCCGGCGTC 
GCCCACGCCC AGACCATCAC CACCAACCAG ACGGGCACCC ACAACGGGTA CTACTTCTCG 
TTCTGGACCG ACTCGCAGAA CACGGTCTCG ATGACGCTCG GCGGCGGCGG GAACTACAGC 
ACGTCGTGGC GCAACACCGG GAACTTCGTG GCGGGCAAGG GCTGGAGCAA CGGCAGCCGC 
CGGACGGTGA ACTACTCGGG CAGCTTCAAC CCCTCGGGCA ACGGCTACCT GTGCCTGTAC 
GGCTGGACGT CCAACCCGCT GGTCGAGTAC TACATCGTCG AGAGCTGGGG CAACTACCGC 
CCCACGGGCA CGTTCAAGGG CACCGTGAGC AGCGACGGCG GCACGTACGA CGTCTACCAG 
ACGATGCGCT ACAACGCGCC GTCGGTGGAG GGCAACAACA AGACGTTCCC GCAGTTCTGG 
AGCACCCGGC AGGCCAAGCG GGTCGGCGGC TCCATCACCA CGGGCAACCA CTTCGACGCC 
TGGAGCCGGT ACGGGCTGCG CCTGGGCGAC TTCAGGTACT ACATGATCAT GGCGACCGAG 
GGCTACCAGA GCAGCGGCAA CTCGAACATC ACCGTCTCCT GA
 
Protein sequence
MAEAADAAAG GQHRIGRRLF LGGAGATVLG AASGLVLPGV AHAQTITTNQ TGTHNGYYFS 
FWTDSQNTVS MTLGGGGNYS TSWRNTGNFV AGKGWSNGSR RTVNYSGSFN PSGNGYLCLY 
GWTSNPLVEY YIVESWGNYR PTGTFKGTVS SDGGTYDVYQ TMRYNAPSVE GNNKTFPQFW 
STRQAKRVGG SITTGNHFDA WSRYGLRLGD FRYYMIMATE GYQSSGNSNI TVS