Gene Amir_4072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4072 
Symbol 
ID8328265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp4782775 
End bp4784049 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content75% 
IMG OID644944537 
Productprotein of unknown function DUF214 
Protein accessionYP_003101774 
Protein GI256378114 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000314908 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACGCGT CGTCGTCGCC ACTGCCGCCG TCGTCGGAGG CGACCGAGCG GTTCGAGCCG 
GTCGCGCGGT CCTCGGGGCC GCCGTCGCCG CCCCGGCTGG CGCCGGCGGA CCTGCTGTCG
CTGGGCATGA TCGGGCTGCG GACCCGGAAG CTGCGGGCGG TGCTGTCGGC GCTGGGCATC
TCGTTGGGGA TCGCGACGGT CGTGGTGGTG ACCGGCATCC CGGCGTCCGG GCAGCGGGCG
CTGATGGACG AGCTGACCGC GTTGGGCACC AACACGTTGC GGGCGCAGAT GGCCCCCAGC
GGGCAGGAAC CCGTTCCGCT GCCCGAGGCC TCGGCGGGGA TGGCCGGGCG GATCGGGCCG
GTGACGGCGT CGGCCGCGGT GGCCAACACG CACACCCGCG TGCGTCGGTC CGACCTCATG
GGTGATTCTG CGAGTTCCGA CCTCACGGTG CTCGCAACCA GCCTCGGACT CCTGGAGACC
GTGAACGGGA GAGTGGCGAG CGGGGAGTAC ATCACCGGGT CGACCCAGGC GTTTCCGTTC
GTGGTGCTGG GACACGTGGC GGCGGGCAGG CTCGGGATCG ACCGGGTTCC GGAGACCGGC
GAGCGGCCGA CGGTCCACAT CGGACGGACC AGGTTCACCG TGGCGGGGGT GCTGGCCCCG
ATGCCGCTCG CGCCGGACGT CGAGCGGTCG GTGCTCGTCG GGTGGGACGC GGCGAAGGCG
GAGCTGGGGT TCGACGGGCG GCCGACGGTG GTCTACGTCA AGGCGCGCGA GGAGTCCGTC
GAGGCGGTGC GGACGGCGCT GGCCGCCACG CTGCACCCGG AGGCTCCGGG CAAGGTGCAG
GTGAGCAGGC CGTCCGACGC GTTGGCGGCG AAGCGGGCGA CCGAGAGCTC GTTCTCGGCG
CTGCTGCTGG GGCTGGCCGG GGTGGCGCTG CTGGTCGGCG GGGTCGGGGT GGCCAACACG
ATGGTCATCT CGGTGCTGGA GCGGCGGCGG GAGATCGGGC TGCGGCGGGC GCTCGGGGCG
ACGCGCGGGC AGATCCGGGG GCAGTTCCTC ATCGAGGCGG TGCTGCTGTC GGCGCTGGGC
GGGGTGGCGG GGACGGGGCT CGGGGTGGTC GCGGTGATCG GGTACGCGGG GCTGCGCTCG
TGGCCGGTCG TGATCCCGGT GGCGGCGGTG GGCGGCGGGG TGGTCGCGGC CGTCGTGGTG
GGGGCGGTGG CGGGGCTGTA CCCGTCGATC CGGGCCAGCC GGTTGACGCC CACGCAGGCG
CTGGCGGCGC AGTAG
 
Protein sequence
MNASSSPLPP SSEATERFEP VARSSGPPSP PRLAPADLLS LGMIGLRTRK LRAVLSALGI 
SLGIATVVVV TGIPASGQRA LMDELTALGT NTLRAQMAPS GQEPVPLPEA SAGMAGRIGP
VTASAAVANT HTRVRRSDLM GDSASSDLTV LATSLGLLET VNGRVASGEY ITGSTQAFPF
VVLGHVAAGR LGIDRVPETG ERPTVHIGRT RFTVAGVLAP MPLAPDVERS VLVGWDAAKA
ELGFDGRPTV VYVKAREESV EAVRTALAAT LHPEAPGKVQ VSRPSDALAA KRATESSFSA
LLLGLAGVAL LVGGVGVANT MVISVLERRR EIGLRRALGA TRGQIRGQFL IEAVLLSALG
GVAGTGLGVV AVIGYAGLRS WPVVIPVAAV GGGVVAAVVV GAVAGLYPSI RASRLTPTQA
LAAQ