| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3973 |
|---|
| Symbol | |
|---|
| ID | 8328166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 4656811 |
|---|
| End bp | 4658328 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 644944447 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_003101684 |
|---|
| Protein GI | 256378024 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.617507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGCACCA CCATGACCCG TCGTGGTTTC CTGGCGCTCG CGGGTGGCGC CGCCCTCGCC
GGGTGCACGG CGTCGGCCGA GGAGGTCGCG CCCGACGGCC AGGCCGTCGG GGGCGGGCAG
CTGCGCGCCC TGTTCCCCGG CGCCGGCGCG GGCGAGACCC TGGACCCGCA CGTCCCCGGA
TCGGCGCTGG ACCGGGCGCG GCACAAGGCG CTGTTCGACA AGCTGGTCGA GCTGGACGAC
GAGCTGCGCC CCGTGCCCAG GCTCGCCAAG CGCTGGGAGT CCAACGCCGA CGCGACGGTC
TGGCGCTTCA CCCTGCGCGA GGCCTCGTTC CACGACGGGC GGGTGCTCAC CCCGGACGAC
GTGCTCGCCA CCCTGGCCCG CGTCACCGAC GCGAACGCGC AGGGGCGGGT GGCGCGCTCC
GCGCTCGCGG CGCTGGACCT GGCGAACAGC CGGGCCGCCG ACGCCACCAC GGTGGAGCTG
GCGCTGACCG CCCCCACCGC CGAGCTGCCC GCGCTGCTGG CCGCGGCAGG CGCGGCGATC
GTCCCGGCCG ACTACGCCGA CCCGGCGAAG GCCGTGGGCA CCGGGCCGTT CGCGCTGGCC
GCGTTCGAAC CGGGGCGGGC GCTGGTGGCG CGCCCGTTCG CCGACCACTG GGACGGCGCC
CCGCACCTGT CCGAGCTGCA GGTGCTCACG GCGGGCGACG AGGCCGCGCG CGTGCGGGCG
CTGCGGGAGG GCACGGCCGA GTACGCGCAC GGGGTGGGCC CGGCGTTCGT GGACGCGGCA
GGGTCGTCGC TGCGCGCGCT GACCGCGCGG GGCGGCACCG CGCACGGCTT CGTGATGCGC
GCCGACCGGG CCCCGTTCGA CGCTCCGGCC GTGCGGGCGG CGTTTCGCCT GCTGGCCGAC
CGGACCGCGC TGGTCGGGCG GGTGCTCGGC GGGCGGGGCG AGGTGGGCAA CGACCTGTTC
GGCAAGGGGG TCCAGCACTA CGCGGACGAC CTGCCGCAAC GCCTGCGGGA CGTGGGCGCG
GCGCGGGAGC TGCTGCGCGG CGCGGGCGCG GAGGGGCTGG CGGTCACCCT GCGCACCACC
GCGCTGCCGG GGGTGCTGGA GGCGGCCGAG CTGTACGCGG CGCAGCTGCG CGAGGGCGGC
GTGCGGGTGG CCGTGGACGT GCGGCCCGAG GCGACCTACG CGGCCGACCG CGCGGCGGGC
GACGGCCTGT GGAGCTACTG GGCCGAGCCG ACGACGATCC CCGGTCACCT GGAGGCCGCC
GAGGAGCGGG CCGCGACCGG GTGGCAGGAC GTGGAGCACG ACCTCGCGCT GGAGCAGGCG
CGGTCCACCG TGGACTCGGC GACGCGCGGG GAGCTGTACC GGCGGGTGCA GCGGGTGCGG
CACGAGCGGG GCGCGGTGCT GGTGTGGGGG CACGCGGACG TGGTCGTGGG CACGACGGCG
GCGGTGCGCG GGGTCGCGGC GGCGCGGCCG GACACCGACG CGTGGGCCAG GTTCGACCGG
GCCTGGCTGT CCGCCTAG
|
|---|
| Protein sequence | MRTTMTRRGF LALAGGAALA GCTASAEEVA PDGQAVGGGQ LRALFPGAGA GETLDPHVPG
SALDRARHKA LFDKLVELDD ELRPVPRLAK RWESNADATV WRFTLREASF HDGRVLTPDD
VLATLARVTD ANAQGRVARS ALAALDLANS RAADATTVEL ALTAPTAELP ALLAAAGAAI
VPADYADPAK AVGTGPFALA AFEPGRALVA RPFADHWDGA PHLSELQVLT AGDEAARVRA
LREGTAEYAH GVGPAFVDAA GSSLRALTAR GGTAHGFVMR ADRAPFDAPA VRAAFRLLAD
RTALVGRVLG GRGEVGNDLF GKGVQHYADD LPQRLRDVGA ARELLRGAGA EGLAVTLRTT
ALPGVLEAAE LYAAQLREGG VRVAVDVRPE ATYAADRAAG DGLWSYWAEP TTIPGHLEAA
EERAATGWQD VEHDLALEQA RSTVDSATRG ELYRRVQRVR HERGAVLVWG HADVVVGTTA
AVRGVAAARP DTDAWARFDR AWLSA
|
|---|
| |