Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_3948 |
Symbol | |
ID | 8328141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 4628751 |
End bp | 4630325 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644944424 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003101661 |
Protein GI | 256378001 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.448257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACA CCGCTGTACC CGCGACCGGG GCCCCGAGCA CCTCGCGCCG CGACGTCATC CAGGCGATGA CGGGCCTGAT GCTGGGCATG TTCGTGTCCA TCCTGGCCTC GACCGTCGTC TCGAACGCCC TGCCGCGCAT CATCTCCGAC CTCGACGGCT CGCAGTCCGT CTACACCTGG GTCGTCACCG CCGAGCTGCT CGCGATGACC GCCACCGTCC CCCTGTGGGG CAAGCTCGCC GACCTCTACA GCCGCAAGCT GCTCATCCAG CTCTCCCTCG GCCTGTTCGT GGTCGGCTCG CTCCTGGCGG GCTTCTCGCC GAACGTCGAG GTGCTGATCG TCAGCCGCGT CGTCCAGGGG CTCGGCGCGG GCGGCATGAC CGCGCTGTCC ACCATCGTGA TGGCCGCGAT GATCCCGCCG CGCGAGCTGG GCCGCTACGC CGGTCTGTTC GGCGCCGTCT TCGGCATCGG CACCGTCGCC GGCCCGCTCA TCGGCGGGTT CCTGGTGGAC ACCTCGTGGC TGGGCTGGCG CTGGTGCTTC TTCATCGGCG TCCCGTTCAC CCTGGCCGCG ATCGTGCTGC TCCAGCGCAC CCTGCACCTC CCGCTGGTGC GCAAGGACTC CGTCCGGATC GACTACCTGG GCGCGGCGCT GATCACCGGC GGCGTCTCCA CCCTGCTGAT CTGGTCCACG CTCGCGGGCG GCTCGTTCGA GTGGGTCTCC GCCTGGTCCG CCGTGCTGGT CGGCGGCGGC GTGCTGCTGC TGGCTCTGGC CGTGTGGGTC GAGTCCCGCG CCGCCGACCC CGTGGTGCCG CTGCGCCTGT TCGCCAACCG CACCGTCAGC CTCACCACCA TCGCCAGCGT CCTGGTGGGC GTGGCGATGT TCGGCGGCAC GGTGTTCCTG TCGCAGTACT TCCAGATCGG CCTCGGCAAG ACCCCCACCC AGGCCGGTCT GATGAGCCTG CCGATGGTGT TCGGCCTGTT CCTGTCGTCC ACGATCGCCG GTCAGCTGAT CACCAAGTGG GGTCGCTGGA AGGTGTTCCT GGTCGCGGGC GCCGCGATCA TGGTCGTGGG GATGCTGCTG CTGTCCACGA TCGACGCGAA CACCACCGTG CTCGTGGTCG GCGTGCACAT GGCCGTGCTC GGCGTCGGCG TCGGCATGGT GATGCAGAAC CTGGTGCTGG CCGCGCAGAA CGACGTGCCC GCCAAGGACC TCGGCGCGAC CACGTCCACG CTGACCTTCT TCCGCAGCCT CGGCGGCTCG ATCGGCGTGA GCGCGCTGGG CGCGGTGCTG GCCAACCGGG TGTCCACGCT GATGACCGAG AAGCTCACCG CGCTGGGCGT GCCCGCCGAC ATGCTCGCCA GCGGCGGCGG CCACACGGCG GTGCCCGACC TGTCGGCGCT GCCGGAGCCG ATCCGGCTGG TGGTGCGCGA CGTGTACGCC ACGGCCACCG CCGAGCTGTT CCTGATCGGC GCGCCGATCG CCGCGATCGC GCTGCTCGCG GTGCTGTTCA TCAAGGAGAA GCCGCTCAAG GAGCAGAGCG GCGACGAGCG GCTCGCCGCG GAGCTGCCGC ACTGA
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Protein sequence | MTDTAVPATG APSTSRRDVI QAMTGLMLGM FVSILASTVV SNALPRIISD LDGSQSVYTW VVTAELLAMT ATVPLWGKLA DLYSRKLLIQ LSLGLFVVGS LLAGFSPNVE VLIVSRVVQG LGAGGMTALS TIVMAAMIPP RELGRYAGLF GAVFGIGTVA GPLIGGFLVD TSWLGWRWCF FIGVPFTLAA IVLLQRTLHL PLVRKDSVRI DYLGAALITG GVSTLLIWST LAGGSFEWVS AWSAVLVGGG VLLLALAVWV ESRAADPVVP LRLFANRTVS LTTIASVLVG VAMFGGTVFL SQYFQIGLGK TPTQAGLMSL PMVFGLFLSS TIAGQLITKW GRWKVFLVAG AAIMVVGMLL LSTIDANTTV LVVGVHMAVL GVGVGMVMQN LVLAAQNDVP AKDLGATTST LTFFRSLGGS IGVSALGAVL ANRVSTLMTE KLTALGVPAD MLASGGGHTA VPDLSALPEP IRLVVRDVYA TATAELFLIG APIAAIALLA VLFIKEKPLK EQSGDERLAA ELPH
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