Gene Amir_3887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3887 
Symbol 
ID8328080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp4559023 
End bp4560003 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content73% 
IMG OID644944371 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003101608 
Protein GI256377948 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCTTG TCACCACCCC TTTCGACGCC ACGAGTACGG CCGCGGACGT CGTGACCGGC 
GTCGACCTCA CCGGTAGGCG CGCCATCGTC ACCGGCGGCG CCTCGGGCAT CGGGCGTGAG 
ACCGCCCGCG CGCTCGCCTC GGCAGGCGCC GAGGTCACCC TGGCCGTCCG CGACACCGCC 
GCCGGCATGG AGGTCGCGGC CGCGATCAGC GCGGCCACCG GCAATCCGGC AGTCACGGCC 
GCGTCGCTCG ACCTGGCAGA CCACAGCGGT GTCCAGGCGT TCGCGGCCGC GTGGAACGGC 
CCGCTCGACA TCCTCGTCAA CAACGCCGGC GTGATGGCAC TCCCGACGCT CGAACGCGTC 
GACTCCGGCT GGGAGCGCCA GTTCGCCGTC AACCACCTCG GCTCGGCCGC GCTCACCCTC 
GGCCTGCACC GCGCGCTGGC CGTCGCCGAC AGCGCCAGGG TCGTCAACGT CTCCTCCTCC 
GGGCACCTGA TGGCGCCTGT CGACTTCGAG GACGTCAACT TCGAACATCG CCCCTACACC 
CCCTACGGCG CCTACGGCCA GTCCAAGACC GCGATGATCC TGTTCACGGT CGCCCTCGCC 
TCGCGGTGGG CACCGGACGG CATCACCGTC AACGCCCTGC ACCCCGGCGG GATCATGACC 
AACCTCCAGC GTCATCTCGA CGACGCCGGC CTGGCCGCCA TCGGCGCCAA GGACGCCGAC 
GGCACCACGC TCGCCGTCCC GCCCGGCTGG AAGAGCGTCG AGCAGGGCGC CGCGACGTCG 
GTGCTGCTGG CCGCCTCTCC ACTGGTCGCC GGTGTCACCG GCCGCTACTT CGAGGACGCG 
GCCGAGGCCG CGCCCTCGCC GGACGGCGAC CCGTTCAAGC CCGGCGTGGC CGACTACGCG 
CTCGACCGCG AACTGGCCGA CCGGCTCTTC GCCCTCACCC TCGCGGCGCT GGACCAAGGC 
GTGTCCCGCG TGGGCAGGTG A
 
Protein sequence
MTLVTTPFDA TSTAADVVTG VDLTGRRAIV TGGASGIGRE TARALASAGA EVTLAVRDTA 
AGMEVAAAIS AATGNPAVTA ASLDLADHSG VQAFAAAWNG PLDILVNNAG VMALPTLERV 
DSGWERQFAV NHLGSAALTL GLHRALAVAD SARVVNVSSS GHLMAPVDFE DVNFEHRPYT 
PYGAYGQSKT AMILFTVALA SRWAPDGITV NALHPGGIMT NLQRHLDDAG LAAIGAKDAD 
GTTLAVPPGW KSVEQGAATS VLLAASPLVA GVTGRYFEDA AEAAPSPDGD PFKPGVADYA 
LDRELADRLF ALTLAALDQG VSRVGR