| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3234 |
|---|
| Symbol | |
|---|
| ID | 8327424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 3771068 |
|---|
| End bp | 3772381 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644943748 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_003100988 |
|---|
| Protein GI | 256377328 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCG CGGAGTTGCT GCCCAGCGTC GGCATGACCG GCGAACCGGC CCTGGAGGCG
GGGCTGTGGC CCCTGGGGAC CCGGCTGGAG CGGGGGGAGC TGCTGCTCGG CGGGGTGCCC
GCGACCGAGC TCGCCGCCCG GTTCGGCACG CCCTGCCAGG TGCTCGACGA GGGCACGGTC
CGGGCGCGGG CGCGCGGGTT CCGGGAGGTG CTGCCGGAGG CTGAGGTGGT GTTCGCGGGC
AAGGCGCTGC CGTGCCGCGC GGTGTACCGG TGGGTGGCGG ACGAGGGGCT GTCGCTGGAC
GTGTGCTCGG CGGGGGAGCT GGCGATCGCG CGGTCGGTCG GGTTCCCGGC GGAGCGGATT
CTGCTGCACG GCAACGTCAA GACGCCCGAG GACCTCAAGG CCGCCCTCGG GTACGGGGTC
GGGCGGGTGG TGGTGGACTC GTTCGACGAG ATCGAGCAGC TGGGCGCGCT GGCCAGGGGG
CCGCAGGACG TGCTGGTCCG GGTCACCCCC GGCGTCGACC CGCGCACCCA CCGGGCGGTG
GCGACCGGGG TGGAGGACCA GAAGTTCGGC TTCCCCCTGG CGGGTGGGGA CGCGCTGGAG
GCGGTGCTGC GGGTGGTCGA GCAGCCGTCG CTGAGGCTGG TGGGGCTGCA CTGCCACGTC
GGGTCGCAGG TGCGGCACGT CGCGGTGTAC GAGGAGGCGG CGCGGCGGAT GGTCGGGCTG
ATCGCCTCGT GCGGGGTGCG GATCGAGCAG CTGGACCTCG GCGGCGGGTT CGCGGTGCCC
TACCTGCCGG GGGAGGGGGA GTTCGACCTT GGCGGGTTCG CGCACCGGGT GCGGGTGGCG
CTGAGCCACG AGTGCGCGCT GCGGCGCGTG CCGGTGCCGA GGCTGCTGAT CGAGCCGGGG
CGGTCGGTCG TCGCGGGCGC TGGTGTGACG CTGTACCGGG TGGCTGCCGT CAAGCGCGGG
GTGAGGCGGG TGTTCGTGGC CGTGGACGGG GGCATGAGCG ACAACCCCAG GCCCGCGCTG
TACGGGAGCC GGTACGCGGT GCGCCTGGTC GGCCGGGGCG GGCGGCGCGC GCCGGTGACG
GTGGTGGGCA GGCACTGCGA GGCGGGTGAC GTGCTCGCCG AGGACGTGCC GCTGCCCGCG
GACGTGCGCG CGGGGGACCT GCTGGCGGTG CCGGTGACGG GCGCCTACCA CCACGCGCTG
GCGTCGAACT ACAACGCCGT GGGCAGGCCG CCTGTGGTGG GCGTGCGCGA CGGAGTGGCG
CGGGTGCTGG TGCGGCGGGA GACGGAGGAG GATGTGCTGC GGCGGGAGGT GTGA
|
|---|
| Protein sequence | MTLAELLPSV GMTGEPALEA GLWPLGTRLE RGELLLGGVP ATELAARFGT PCQVLDEGTV
RARARGFREV LPEAEVVFAG KALPCRAVYR WVADEGLSLD VCSAGELAIA RSVGFPAERI
LLHGNVKTPE DLKAALGYGV GRVVVDSFDE IEQLGALARG PQDVLVRVTP GVDPRTHRAV
ATGVEDQKFG FPLAGGDALE AVLRVVEQPS LRLVGLHCHV GSQVRHVAVY EEAARRMVGL
IASCGVRIEQ LDLGGGFAVP YLPGEGEFDL GGFAHRVRVA LSHECALRRV PVPRLLIEPG
RSVVAGAGVT LYRVAAVKRG VRRVFVAVDG GMSDNPRPAL YGSRYAVRLV GRGGRRAPVT
VVGRHCEAGD VLAEDVPLPA DVRAGDLLAV PVTGAYHHAL ASNYNAVGRP PVVGVRDGVA
RVLVRRETEE DVLRREV
|
|---|
| |