| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3214 |
|---|
| Symbol | |
|---|
| ID | 8327404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3744954 |
|---|
| End bp | 3746327 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644943728 |
|---|
| Product | Endo-1,4-beta-xylanase |
|---|
| Protein accession | YP_003100968 |
|---|
| Protein GI | 256377308 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3693] Beta-1,4-xylanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.176757 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTGA CATCGAGGTC AGTGTCCCGA GCCGGGTTCG GCGCGGTGGC GCTGGCCGCC
GCGCTCGGAG CCACCCTGCT CGTGAGCACC CCCGCCAGCG CCGCCACGAC CCTGGGCGCC
GCAGCCGCCC AGACCGGCCG GTACTTCGGC GCGGCCGTCG CGGCGGGCAG GCTGAACGAC
TCGACCTACG TGAACATCCT GAACCGCGAG TTCAACTCGG TCACCGCCGA GAACGAGATG
AAGTGGGACG CCACCGAGCC CAACCGCGGC CAGTTCAACT ACACCGCCGG TGACCGGATC
CTCAACCAGG CGCTCAGCAA CGGCAAGCGG GTGCGCGGGC ACGCCCTGCT GTGGCACCAG
CAGCAGCCGG GCTGGGCGCA GAGCCTGAGC GGGTCAGCCC TGCGGCAGGC CGCGCTCAAC
CACGTCACCC AGGTCGCCAC CCACTACCGG GGCAAGATCC ACTCCTGGGA CGTGGTGAAC
GAGGCGTTCG CCGACGGCGG CTCCGGAGGC CGCCGGGACT CGAACCTCCA GCGCACCGGC
AACGACTGGA TCGAGGCCGC GTTCCGCGCC GCCCGCGCGG CCGACCCCGC CGCGAAGCTG
TGCTACAACG ACTACAACAC CGACGGGATC AACGCGAAGT CCACCGGGAT CTACACCATG
GTGCGGGACT TCAAGTCGCG CGGCGTGCCG ATCGACTGCG TGGGCCTCCA GTCGCACCTG
ACGAACAACG CGCCGTCGGA CTACCAGGCC AACATCAAGC GCTTCGCGGA CCTGGGCGTG
GACGTGCAGA TCACCGAGCT GGACATCGCG GGCTCCAACC AGGCCAACGC CTTCGGCGCG
GTGACCCGCG CGTGCCTGGC CGTGCCGCGC TGCACCGGCA TCACCGTGTG GGGCATCCGC
GACACCGACT CGTGGCGCGG CGGCGAGAAC CCGCTGCTGT TCGACGGCAG CGGCAACAAG
AAGGCCGCCT ACACCTCGGT GCTGAACGCG CTGAACGCGG GCGGCACGAC CGTGCCGGGC
GAGACCCCGC CGACCACCAC TCCCCCGACC ACCCCGCCCA CCACGACGAA CCCGCCGCAG
CCGGGCGGCT GCACGGCGTC GGTGTCGGTG AACTCGTGGG AGGGCGGTTT CGTCGCCACG
GTCAAGGTGA CCGCCGGGTC GAGCGCGCTG AACGGCTGGA AGGTCACCAC CGCGCTGCCG
TCGGGCACGT CGGTGACCGG CTCGTGGAGC GCGAGCGGCA GCGGCACGTC CGGCACGGTG
GACTGGACCA ACGTCGCCTA CAACGGGGCC GTCGCGGCGG GCCAGTCGAC CGAGTTCGGC
TTCCAGGGCA CCGGGAGCGC CGCCGGTCTC TCCCCGGCCT GCGCGGCGAG CTGA
|
|---|
| Protein sequence | MELTSRSVSR AGFGAVALAA ALGATLLVST PASAATTLGA AAAQTGRYFG AAVAAGRLND
STYVNILNRE FNSVTAENEM KWDATEPNRG QFNYTAGDRI LNQALSNGKR VRGHALLWHQ
QQPGWAQSLS GSALRQAALN HVTQVATHYR GKIHSWDVVN EAFADGGSGG RRDSNLQRTG
NDWIEAAFRA ARAADPAAKL CYNDYNTDGI NAKSTGIYTM VRDFKSRGVP IDCVGLQSHL
TNNAPSDYQA NIKRFADLGV DVQITELDIA GSNQANAFGA VTRACLAVPR CTGITVWGIR
DTDSWRGGEN PLLFDGSGNK KAAYTSVLNA LNAGGTTVPG ETPPTTTPPT TPPTTTNPPQ
PGGCTASVSV NSWEGGFVAT VKVTAGSSAL NGWKVTTALP SGTSVTGSWS ASGSGTSGTV
DWTNVAYNGA VAAGQSTEFG FQGTGSAAGL SPACAAS
|
|---|
| |