| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3040 |
|---|
| Symbol | |
|---|
| ID | 8327230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3514866 |
|---|
| End bp | 3515885 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644943565 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_003100805 |
|---|
| Protein GI | 256377145 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGTT CGGCGCACCG GCAGGTGAGC GTCCGGGACG TGGCGACGGC GGCGGGCGTG
TCGGTCGGCA CGGTCTCCAA CGTGCTCAAC CGGCCCGACG TGGTCAGTCC GGGGACGCGG
GCGCGGGTGC ACGCGGTGAT GGCGGAGCTG GGGTTCGTGC GCAACGAGTC GGCGCGGCAG
CTGCGGGTGG GGCGCGGGCG GGCGCTGGCG TACGTGATGC TCGACGGCGG GAACCCGTTC
TTCGCGGACG TGGCGCAGGG CGTGGAGGAG GAGGCGGAGG CGAACGACCT GTCGCTGTTC
CTGTGCAACA GCGACAACCG AGCCGAGCGC GAGCTGACCT ACCTGACCCG CCTGGAGCAG
CAGCGGGTCC AGGGCGTCCT GATCACCCCA GCCGACCCCG GCGCCCCGAT CCTGGCCGAG
CTGCCCGCGC GCGGCACCCC GGTGGTGATC GTGGACCGCA CGAGGGGCGG CGGGACGCAC
TGCACGGTCG CGGTGGACGA CGTGCTCGGC GGCGAGCTGG CGGTGGCGCA CCTGCTGGAG
GCGGGCCACG AGCGGGTGGC CTTCGTCGGC GGTCCGATGA CCGTCGGCCA GGTCCGCGAC
CGGCGCGAGG GCGCGCTGCG GGCGCTGCGC GGCTCGTCGG CGTCGCTGGT GGACGTGCCG
ACGGCGGCGC TGACCGTGGC CGAGGGCGGG GAGGCCGGGC AGCGGTTGTC CGGCCTGCCC
GCGAGCCGCA GGCCGACGGC GGCGTTCTGC GCGAACGACC TGCTGGCGCT CGGGCTGTTG
CAGCACTGCG TGGGCACGGG CCTGCGCATC CCGGAGGACC TGGCGATCGT GGGCTACGAC
GACATCGAGT TCGCCGCGGC GGCGGCCGTG CCGCTGACGT CGGTGCGCCA GCCCCGGCGG
TTGCTCGGCC GGACGGCGGC GGCGTTGCTG CTGAAGGAGG TCCGGGAGGA GGGGCACCGG
CACGAACAGG TGATCTTCAC ACCTGAACTG GTGGTCCGGG GGTCGAGCCG GGGGCGCTGA
|
|---|
| Protein sequence | MAGSAHRQVS VRDVATAAGV SVGTVSNVLN RPDVVSPGTR ARVHAVMAEL GFVRNESARQ
LRVGRGRALA YVMLDGGNPF FADVAQGVEE EAEANDLSLF LCNSDNRAER ELTYLTRLEQ
QRVQGVLITP ADPGAPILAE LPARGTPVVI VDRTRGGGTH CTVAVDDVLG GELAVAHLLE
AGHERVAFVG GPMTVGQVRD RREGALRALR GSSASLVDVP TAALTVAEGG EAGQRLSGLP
ASRRPTAAFC ANDLLALGLL QHCVGTGLRI PEDLAIVGYD DIEFAAAAAV PLTSVRQPRR
LLGRTAAALL LKEVREEGHR HEQVIFTPEL VVRGSSRGR
|
|---|
| |