Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_2425 |
Symbol | |
ID | 8326614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 2693123 |
End bp | 2694754 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644942970 |
Product | Cholesterol oxidase |
Protein accession | YP_003100211 |
Protein GI | 256376551 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.939121 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACCCGGT CCGTTTCCCG CAGATCCTTC CTCGCAGGCG CAGGCACGGC GTTGGGCGCG ACCGCGTTCA GCGGCGGCGC TTCAGCGTCG GGCAGCACGG CGCCAGGCGC CCCGGCGTCG GGCCGCTCCC CCGCCGGGAT CCCCGACGGG GCGCGCGTGC CCGCGCTGGT CGTCGGCTCC GGGTACGGCG GCGCGGTGGC CGCGCTGCGG CTGGCGCAGG CGGGCGTGCC GGTGCACGTG GTCGAGAAGG GCCGGTCGTG GGACGAGCCG GGGTGGGACG GCAAGGTCTT CGCGAACATG CTCAACCCCG ACGAGCGCTC GTACTGGCTG CGCACCTGGA CCAAGCAGCC GCTCAGCAAC TTCCTCGGCC TGCCGGTGGA CCGCGCCGTC CCGCGCCGCA CCGGAATCCT GGACGCCGAG GAGTTCGCCG GGATCACCGT CTACCAGGGG CGGGGCGTGG GCGGCGGGTC GCTGGTCAAC GGGGGCATGG CGGTGACGCC CCGGCGGGAG CGGTTCGCGG CGGTCCTGCC GGGCGTGGAC CCCGAGGAGA TGTACTCGAC GTACTACCCG CTGGCGAACG CCGAGCTGGG CACCGGGCTG GTCGACCCGG ACTGGTGGGA GCAGGCCGAG TGCTACCGGT ACGCCAGGGT GGGGCGGGCG CAGGCGCAGC GGTCCGGGTT CCCGTTCGAG CTGGTGCCCG GCGTGTACGA CTGGGCGCAC CTGGAGCGCG AGGAGGCCGG GACCGCGCCC CGGTCGGCGC TGGCCGCCGA GGTGATCTAC GGCAACAACC ACGGGAAGCT GTCGCTGCCC AGGACGTACC TGGCGCGGGC GCTGGCCACC GGGCGGGTGA CGATCTCGGC GCTGCACGAG GTGACGAGCG TGCGGGCGGT CGGCGGCGGG TACGAGGCGC TGCTCGACGT GCTGGACACG AACGGGCGGG TGACGTCCAC CAAGCGGGTG GAAGCGGAGC GGGTGTTCTT CGCGGCCGGG AGCGTGGGGA CGAGCAAGCT GCTGACCCGG TTGCGGGACA CCGGGGCGCT GCCCGCGCTG AGCCCGGAGG TCGGGCTGGG GTGGGGGGAG AACGGGAACG TGATGGTGGG GCGGGCGAAC AAGGCGTCCG ACCCGACCGG GGCGCTCCAG TCGTGCATCC CGACCGGCGG GATCGACAAC TGGGCGGCGG GCGGGGCGTT CGCCGAGGTC GCGCCGCTGC CGACCGGGGT CGAGACGTTC ACGTCGTTCT ACCTGGCGAT CACGGCCAAC CCGAGGCGCG GGCGGTTCAC CTGGAACCCG GAGGCGGGGC GGGTCGAGCT GGACTGGCGG CAGGAGTGGA AGCAGCCGTC GGTCGACATG GCGCGGACGA TCTTCGACCG GATCAACTCG GTCGAGGGGA CGGTGTACCG GGCGGACCTG TTCGGGGCGG GGAAGGTGTG GGGCGACGGG CTGACGTACC ACCCGCTGGG CGGGGTGGTG CTGGGGCGGG CGACGGACGG GCACGGGCGG CTGGCGGGGT ACCGGGGGCT GTACGTGGTG GACGGGTCGC TGATTCCGGG GAACACGAGC GTGAACCCGT TCGTGACGAT CACGGCGCTG GCGGAGCGGA ACCTGGCCCG GATCGTGGCG CGGGACCTGT AG
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Protein sequence | MTRSVSRRSF LAGAGTALGA TAFSGGASAS GSTAPGAPAS GRSPAGIPDG ARVPALVVGS GYGGAVAALR LAQAGVPVHV VEKGRSWDEP GWDGKVFANM LNPDERSYWL RTWTKQPLSN FLGLPVDRAV PRRTGILDAE EFAGITVYQG RGVGGGSLVN GGMAVTPRRE RFAAVLPGVD PEEMYSTYYP LANAELGTGL VDPDWWEQAE CYRYARVGRA QAQRSGFPFE LVPGVYDWAH LEREEAGTAP RSALAAEVIY GNNHGKLSLP RTYLARALAT GRVTISALHE VTSVRAVGGG YEALLDVLDT NGRVTSTKRV EAERVFFAAG SVGTSKLLTR LRDTGALPAL SPEVGLGWGE NGNVMVGRAN KASDPTGALQ SCIPTGGIDN WAAGGAFAEV APLPTGVETF TSFYLAITAN PRRGRFTWNP EAGRVELDWR QEWKQPSVDM ARTIFDRINS VEGTVYRADL FGAGKVWGDG LTYHPLGGVV LGRATDGHGR LAGYRGLYVV DGSLIPGNTS VNPFVTITAL AERNLARIVA RDL
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