| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1988 |
|---|
| Symbol | |
|---|
| ID | 8326173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 2204210 |
|---|
| End bp | 2204755 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644942537 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003099782 |
|---|
| Protein GI | 256376122 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0948482 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCTG CCAGACGGGC CGACGCGCTG GTCAACCGCG AGCGCATCCT GGAGGTCGCG
CGGGACGCGC TGGCCGAGTC CGGGTGCGCC TCGCTGAACT CCATCGCCAA GCGCGCGTGC
GTCGGCGCGG GGACGCTCTA CCGGCACTTC CCGACCCGCG AGGAGCTGGT GCTCGCGGTG
TACCGGCACG AGGTGCAGCG GCTGGTGGAC CGGGCTCCCC GGCTGCTGGC CGAGGTCGGG
CCCGAGGAGG CGTTCCGGCG GTGGGCCTCG GGGCTGGCCG GGTACGTGAA GGTCAAGCAC
GGGCTGGGCG AGGCGTTCAG CGCGGCCACG CGGGAGAACC TGGTCAGCGA GTCCTACGCG
CAGGTGTCCG CCGCGGTCGC GGCGCTGCTG GCGGCCGGGA CGAGCGCGGG GGTGTTCCGC
GAGGGGCTGG CGGCCGACGA CGTGCTGCTG CTGATGGGCG GCATGTGGCG GGTGCCGCCG
GGCCCGGACG GGGAGCGGCA GGCCGAGCGG GTGCTGGGGC TGGTGGTCGC GGCGCTGCGG
GCGTAG
|
|---|
| Protein sequence | MPPARRADAL VNRERILEVA RDALAESGCA SLNSIAKRAC VGAGTLYRHF PTREELVLAV
YRHEVQRLVD RAPRLLAEVG PEEAFRRWAS GLAGYVKVKH GLGEAFSAAT RENLVSESYA
QVSAAVAALL AAGTSAGVFR EGLAADDVLL LMGGMWRVPP GPDGERQAER VLGLVVAALR
A
|
|---|
| |