Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1579 |
Symbol | ligC |
ID | 8325763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 1740560 |
End bp | 1741636 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 644942128 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_003099374 |
Protein GI | 256375714 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCCGCTCC CGCTGACCCC GCCCGTGCAG CCGATGCTGG CCACGAGCGC GGACGCCATC CCCACCACCT CGGACCTGCT CTTCGAGCCC AAGTGGGACG GCTACCGCTG CCTGGTGTTC CGCGACGGCT CCGAGGTGGT CCTCCAGTCC CGCGGCGGCA AGCCGCTGAA CCGGTACTTC CCCGAGGTGG AGGCCGCCCT GCGCGGCTCC GCGCTCCCGG ACCGCGTGGT CCTGGACGGT GAGCTGGTCG TCTCCCTGGA CGGGCGGCTC GACTTCGACG CCCTCACCGA GCGGATCCAC CCGGCGGCGA GCCGGGTCGC GCTGCTGTCC GAGCGGACCC CGGCCGGTTT CGTGGCGTTC GACCTGCTCG CCCTGGGTGA CGAGGTCCTG CTCGACCGGC CCACCTCGGA CCGGCGGGCG GCCCTGGAAG ACGTGATCAC ACCGTCCGGC GCGCTGCACC TGACCCCGTG CACCGGGGAC GTCGAGCTGG CCCGCCGCTG GTTCGGGCTG TTCGAGGGCG CCGGGCTGGA CGGGGTGGTC GGCAAGGCCG CGGGCGGCGC CTACCTGCCG GGCAAGCGGG CCATGGTGAA GGTCAAGCAC GCCAGGACCG CCGAGTGCGT GGTCGCCGGG CTGCGCTGGC ACAAGGACAC CGAACCCGGC ACGGCGGCCG GTTCCCTGCT GCTCGGCCTG CACGACGACG CCGGGGTGCT GCACCACGTG GGCGTGGTCG GCTCGTTCAA GGCGGCCGAG CGCCGGTCGC TCGCCGAGGA GCTGACCCCG CTGATCACCG ACGGCGAGCA CCCGTGGGTC GGCCACTCGG ACGAGCGTCG CACGCCAGGG GGAACGAACC GCTGGCGCAA GGAGTCCGAC TGGACCCCGC TGACCCCCGA GCGCGTGCTG GAGGTGTCCT ACAGCCAGAC CGAGGGCGCC GCCCCCGCCC GCCTGCGCCA CAACGGCCAG TTCCGCCGCT GGCGCCCCGA CCGCGACGCC GCCTCCTGCC GCTACGACCA GCTCGACCAG CCCGCCCGCT ACGACCTGGC CGCCGTGCTG CGCGGCGAGG TCAGAAAGGC CCGCTAG
|
Protein sequence | MPLPLTPPVQ PMLATSADAI PTTSDLLFEP KWDGYRCLVF RDGSEVVLQS RGGKPLNRYF PEVEAALRGS ALPDRVVLDG ELVVSLDGRL DFDALTERIH PAASRVALLS ERTPAGFVAF DLLALGDEVL LDRPTSDRRA ALEDVITPSG ALHLTPCTGD VELARRWFGL FEGAGLDGVV GKAAGGAYLP GKRAMVKVKH ARTAECVVAG LRWHKDTEPG TAAGSLLLGL HDDAGVLHHV GVVGSFKAAE RRSLAEELTP LITDGEHPWV GHSDERRTPG GTNRWRKESD WTPLTPERVL EVSYSQTEGA APARLRHNGQ FRRWRPDRDA ASCRYDQLDQ PARYDLAAVL RGEVRKAR
|
| |