Gene Amir_1579 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1579 
SymbolligC 
ID8325763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp1740560 
End bp1741636 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content75% 
IMG OID644942128 
ProductATP-dependent DNA ligase 
Protein accessionYP_003099374 
Protein GI256375714 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCGCTCC CGCTGACCCC GCCCGTGCAG CCGATGCTGG CCACGAGCGC GGACGCCATC 
CCCACCACCT CGGACCTGCT CTTCGAGCCC AAGTGGGACG GCTACCGCTG CCTGGTGTTC
CGCGACGGCT CCGAGGTGGT CCTCCAGTCC CGCGGCGGCA AGCCGCTGAA CCGGTACTTC
CCCGAGGTGG AGGCCGCCCT GCGCGGCTCC GCGCTCCCGG ACCGCGTGGT CCTGGACGGT
GAGCTGGTCG TCTCCCTGGA CGGGCGGCTC GACTTCGACG CCCTCACCGA GCGGATCCAC
CCGGCGGCGA GCCGGGTCGC GCTGCTGTCC GAGCGGACCC CGGCCGGTTT CGTGGCGTTC
GACCTGCTCG CCCTGGGTGA CGAGGTCCTG CTCGACCGGC CCACCTCGGA CCGGCGGGCG
GCCCTGGAAG ACGTGATCAC ACCGTCCGGC GCGCTGCACC TGACCCCGTG CACCGGGGAC
GTCGAGCTGG CCCGCCGCTG GTTCGGGCTG TTCGAGGGCG CCGGGCTGGA CGGGGTGGTC
GGCAAGGCCG CGGGCGGCGC CTACCTGCCG GGCAAGCGGG CCATGGTGAA GGTCAAGCAC
GCCAGGACCG CCGAGTGCGT GGTCGCCGGG CTGCGCTGGC ACAAGGACAC CGAACCCGGC
ACGGCGGCCG GTTCCCTGCT GCTCGGCCTG CACGACGACG CCGGGGTGCT GCACCACGTG
GGCGTGGTCG GCTCGTTCAA GGCGGCCGAG CGCCGGTCGC TCGCCGAGGA GCTGACCCCG
CTGATCACCG ACGGCGAGCA CCCGTGGGTC GGCCACTCGG ACGAGCGTCG CACGCCAGGG
GGAACGAACC GCTGGCGCAA GGAGTCCGAC TGGACCCCGC TGACCCCCGA GCGCGTGCTG
GAGGTGTCCT ACAGCCAGAC CGAGGGCGCC GCCCCCGCCC GCCTGCGCCA CAACGGCCAG
TTCCGCCGCT GGCGCCCCGA CCGCGACGCC GCCTCCTGCC GCTACGACCA GCTCGACCAG
CCCGCCCGCT ACGACCTGGC CGCCGTGCTG CGCGGCGAGG TCAGAAAGGC CCGCTAG
 
Protein sequence
MPLPLTPPVQ PMLATSADAI PTTSDLLFEP KWDGYRCLVF RDGSEVVLQS RGGKPLNRYF 
PEVEAALRGS ALPDRVVLDG ELVVSLDGRL DFDALTERIH PAASRVALLS ERTPAGFVAF
DLLALGDEVL LDRPTSDRRA ALEDVITPSG ALHLTPCTGD VELARRWFGL FEGAGLDGVV
GKAAGGAYLP GKRAMVKVKH ARTAECVVAG LRWHKDTEPG TAAGSLLLGL HDDAGVLHHV
GVVGSFKAAE RRSLAEELTP LITDGEHPWV GHSDERRTPG GTNRWRKESD WTPLTPERVL
EVSYSQTEGA APARLRHNGQ FRRWRPDRDA ASCRYDQLDQ PARYDLAAVL RGEVRKAR