| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1436 |
|---|
| Symbol | |
|---|
| ID | 8325616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 1586571 |
|---|
| End bp | 1588013 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644941983 |
|---|
| Product | GTP-binding proten HflX |
|---|
| Protein accession | YP_003099233 |
|---|
| Protein GI | 256375573 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2262] GTPases |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR03156] GTP-binding protein HflX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGACA ACGACAACCA CGACGACGAC CGCTTCGACC GCGACGAGGA GCTGTCCACC
GGCGACCTCG CGCTCGCCGA GCGGGCCGCG CTGCGCCGGG TCGCAGGTCT GTCCACCGAG
CTCGAGGACG TCACCGAGGT CGAGTACCGG CAGCTCCGCC TGGAGCGGGT CGTGCTCGTC
GGGGTGTGGA CCGAGGGCAC GGCGGCGGAC TCCGAGGCAT CACTGGCCGA GCTCGCGCTG
CTCGCCGAGA CCGCGGGATC GCAGGTCCTG GAAGGGCTCG TGCAGCGGCG CGACCGCCCC
GACCCGGCCA CCTACATCGG CTCCGGCAAG GTCGAGCAGC TGCGCGACGT GGTCATCGCG
ACCGGCGCGG ACACCGTGAT CTGCGACGGC GAGCTGTCCC CCGGCCAGCT GCGGCAGCTG
GAGGAGCGGC TCAAGGTCAA GGTCATCGAC CGGACCGCGC TGATCCTGGA CATCTTCGCC
CAGCACGCCT CCTCCAAGGA GGGCAAGGCC CAGGTCGAGC TCGCCCAGCT CCAGTACCTG
CTCCCCCGCC TGCGCGGCTG GGGCGAGTCG CTGTCCCGGC AGGCCGGTGG TCGCGCCGGT
GGCGGCAACG GCGGTGTGGG TCTGCGCGGC CCCGGTGAGA CGAAGCTGGA GACCGACCGG
CGGCGCATCC GCGCGCGGAT CGCGAAGCTG CGGCGCGAGA TCGCGTCCAT GGGCGTGATC
CGGGAGACCA AGCGCAGCGG GCGCGTGGCC AACGCGGTGC CCAGCGTCGC GATCGCCGGT
TACACCAACG CGGGCAAGTC CAGCCTGCTC AATGCGCTGA CCAGCGCGGG CGTGCTGGTC
CAGGACGCGC TGTTCGCAAC CCTGGACACG ACCACCCGGC GCACCAGCAC CCCGGACGGG
CTGCCGTACA CGCTGACCGA CACCGTGGGC TTCGTGCGGC ACCTGCCGCA CCAGCTGGTC
GAGGCGTTCC GCTCCACGCT GGAGGAGGTC GCGGACGCCG ACCTGCTGAT CCACGTGGTC
GACGGCTCGG ACTCGATGCC GGAGAAGCAG GTCGCGGCGG TGCGGGAGGT GATCGGCGAG
ATCGTGGAGA AGCGCGAGGA GCCGATGCCG CCGGAGCTGC TGGTGGTCAA CAAGGTCGAC
GCGGTGGACG AGCTGGTGCA GGCCCGGTTG CGGAACCTGT TCCCCGGCTC GCAGCTGGTG
TCCGCGCACA GCGGCGAGGG CGTGGAGGAG CTGCGGCGGG TCATCGCCGG GCTGATCCCC
CGGCCCGAGG TGATGGTGGA CGCCCTGGTC CCGTACGCGC GGGGCGAGCT GGTCGCGCGG
GTGCACCGCG AGGGCGAGGT GCTCAAGGAG CGGCACACCG AGGAGGGCAC CGAGCTGAGC
GCCCGCGTGC ACCCCGACCT GGCCGGGGCG CTGGAGCAGT ACGCGGTGGG GAGCCGCAGC
TGA
|
|---|
| Protein sequence | MRDNDNHDDD RFDRDEELST GDLALAERAA LRRVAGLSTE LEDVTEVEYR QLRLERVVLV
GVWTEGTAAD SEASLAELAL LAETAGSQVL EGLVQRRDRP DPATYIGSGK VEQLRDVVIA
TGADTVICDG ELSPGQLRQL EERLKVKVID RTALILDIFA QHASSKEGKA QVELAQLQYL
LPRLRGWGES LSRQAGGRAG GGNGGVGLRG PGETKLETDR RRIRARIAKL RREIASMGVI
RETKRSGRVA NAVPSVAIAG YTNAGKSSLL NALTSAGVLV QDALFATLDT TTRRTSTPDG
LPYTLTDTVG FVRHLPHQLV EAFRSTLEEV ADADLLIHVV DGSDSMPEKQ VAAVREVIGE
IVEKREEPMP PELLVVNKVD AVDELVQARL RNLFPGSQLV SAHSGEGVEE LRRVIAGLIP
RPEVMVDALV PYARGELVAR VHREGEVLKE RHTEEGTELS ARVHPDLAGA LEQYAVGSRS
|
|---|
| |