Gene Amir_1426 details

Gene Information

• Locus tag: Amir_1426
• Symbol: sdhA
• ID: 8325606
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 1575828
• End bp: 1577699
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644941974
• Product: succinate dehydrogenase flavoprotein subunit
• Protein accession: YP_003099224
• Protein GI: 256375564
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCCCGAGC TGGAGAGGCA CACCTTCGAC GTGCTCGTGA TCGGCGCGGG GGGCGCGGGA 
CTGCGCGCCG CGATCGAGGC GAGGCAGCGC GGGGCCCGGA CCGCCGTGCT GTGCAAGTCC 
CTGTTCGGCA AGGCGCACAC CGTCATGGCC GAGGGCGGCA TCGCCGCGGC CATGGGCAAC 
GCCAACCCGA ACGACAACTG GCAGGTGCAC TTCCGCGACA CCATGCGCGG CGGCAAGTTC 
CTCAACAACT GGCGCATGGC CGAGCTGCAC GCCAAGGAGG CGCCGCAGCG GGTGTGGGAG 
CTGGAGACCT ACGGCGCGCT GTTCGACCGC ACCAAGGACG GCCGGATCAG CCAGCGCAAC 
TTCGGCGGCC ACGAGTACCC GCGTCTCGCG CACGTCGGCG ACCGCACCGG CCTCGAACTG 
ATCCGCAGCC TCCAGCAGAA GGTCGTCTCG CTCCAGCAGG AGGACTTCGC CGAGACCGGC 
GACCACGAGT CGCGGCTGAA GGTGTTCCAG GAGTTCACCG TCACCGACCT GCCGCTGGAC 
GGCGGCCGGG TCGCGGGCGC GTTCGGCTAC TGGCGCGAGA GCGGCCGGTT CACCCTGTTC 
GAGGCGCCCG CCGTGGTGCT GGCGACCGGC GGCATCGGCA AGTCGTTCAA GGTCACCTCG 
AACTCGTGGG AGTACACCGG CGACGGGCAC GCGCTGGCCC TGCGCGCGGG CGCCGAGCTG 
GTCAACATGG AGTTCGTCCA GTTCCACCCC ACCGGCATGG TCTGGCCGCC CAGCGTCAAG 
GGCATCCTGG TCACCGAGTC GGTGCGCGGC GACGGCGGCG TCCTGCGCAA CTCCGACGGC 
GAGCGGTTCA TGTTCGGCTA CGTGCCCGAG GTGTTCAAGG ACAAGTACGC CGAGGACGAG 
GCCGAGGGCG ACCGCTGGTA CACCGACCCC GACCACAACC GCCGCCCGCC CGAGCTGCTG 
CCCCGCGACG AGGTGGCGCG CGCGATCAAC TCCGAGGTCA AGGCCGGTCG CGGCACCGAG 
CACGGCGGGG TGTTCCTGGA CGTGTCGTCG CGGCTGCCCG CCGAGGAGAT CCGGCGGCGG 
CTGCCGTCGA TGCACCATCA GTTCAAGGAG CTGGCCGACG TCGACATCAC CGCCCAGCCC 
ATGGAGGTCG GCCCGACCTG CCACTACGTG ATGGGCGGCG TGCTGGTCGA CCCGGACACC 
GGCGCGTCGT CGGTGCCCGG CCTGTACGCG GCGGGCGAGG TGTCCGGCGG GATGCACGGC 
TCCAACCGGC TCGGCGGCAA CTCGCTGTCG GACCTGCTGG TGTTCGGCAA GCGCGCGGGC 
GAGGGCGCCG CCGACTACGC GGCCGGGCTC ACCACGCGGC CCAGGTGCGG CGACGAGGCG 
ATCGCGCGGG CCCAGGAGGT CGCGCTGGCC CCGTTCGCGG GCGAGGGCGG GGAGAACCCG 
TACGCGCTGC ACGTCGAGCT CCAGCAGGCC ATGAACGACC TGGTCGGCAT CATCCGCCGG 
GCCGGGGAGA TGGAGAGCGC GCTGGAGCGG CTGGACGGGC TCAAGCGCCG CGCCGCCGCC 
CTCACCGTCG AGGGGCACCG GCAGTTCAAC CCCGGCTGGC ACCTCGCGCT GGACCTGCGG 
AACATGCTGC TGGTCAGCGA GTGCGTCGCC CGCGCCGCGC TGCTGCGCAC CGAGAGCCGG 
GGCGGCCACA CCCGCGACGA CCACCCGCGC ATGGACGCCG ACTGGCGGCG CAAGGTGCTG 
CTGTGCAGCG CCTCCGGCGA CGGCGTGGCC GTGGCCGAGC TGGCCCAGGA GCCGATCCGG 
GCCGACCTGC TGGCGCTGTT CGAGCGCGCC GAGCTGGAGA AGTACCTGAC CGCCGAGGAG 
CTGGAGGGCT GA 

 

Protein sequence

MPELERHTFD VLVIGAGGAG LRAAIEARQR GARTAVLCKS LFGKAHTVMA EGGIAAAMGN 
ANPNDNWQVH FRDTMRGGKF LNNWRMAELH AKEAPQRVWE LETYGALFDR TKDGRISQRN 
FGGHEYPRLA HVGDRTGLEL IRSLQQKVVS LQQEDFAETG DHESRLKVFQ EFTVTDLPLD 
GGRVAGAFGY WRESGRFTLF EAPAVVLATG GIGKSFKVTS NSWEYTGDGH ALALRAGAEL 
VNMEFVQFHP TGMVWPPSVK GILVTESVRG DGGVLRNSDG ERFMFGYVPE VFKDKYAEDE 
AEGDRWYTDP DHNRRPPELL PRDEVARAIN SEVKAGRGTE HGGVFLDVSS RLPAEEIRRR 
LPSMHHQFKE LADVDITAQP MEVGPTCHYV MGGVLVDPDT GASSVPGLYA AGEVSGGMHG 
SNRLGGNSLS DLLVFGKRAG EGAADYAAGL TTRPRCGDEA IARAQEVALA PFAGEGGENP 
YALHVELQQA MNDLVGIIRR AGEMESALER LDGLKRRAAA LTVEGHRQFN PGWHLALDLR 
NMLLVSECVA RAALLRTESR GGHTRDDHPR MDADWRRKVL LCSASGDGVA VAELAQEPIR 
ADLLALFERA ELEKYLTAEE LEG