Gene Amir_1341 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1341 
Symbol 
ID8325521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp1484020 
End bp1484943 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content77% 
IMG OID644941889 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003099139 
Protein GI256375479 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0989891 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAAGT GGACCGAAGT CGACATCCCC GACCAGGCAG GGCGCACCGC GCTGGTGACC 
GGCGCGAACT CGGGCCTGGG CCTGCGCACC GCCGAGGTGC TGGCCGCCAA GGGCGCCAGG 
GTGCTGCTGG CCTGCCGCTC CGGGGAGCGC GGCCTGGCCG CCGTCGAGCG GGTCTCCCGG 
CACGGCGAGG CCGAGTTCGT GCGGCTGGAC CTGGGCGAGC CGGCGTCGGT GCGCGCCGCC 
GCCGAGCGGG TCCAGGAGCT GGCGGGCGAC GGGCTGGACC TGCTGGTCAA CAACGCGGGC 
CTGATGGCCC CGCCGCTCGC CCGCACCGCC GACGGGTTCG AGTCGCAGTT CGGCGTCAAC 
CACCTGGGGC ACGCCGCGCT GACCTGGCTG CTGATGCCCG CGCTGCGGGC CCGCGCGGGC 
GCCCGCGTGG TGACCGTGTC GTCCGTGGCG CACCGGTTGG GCGGCCTGGA CCTGGCCGAC 
CCGAACTTCG AGGTGCGCCG CTACGCCCCG TGGGTCGGCT ACGGCCAGTC CAAGCTCGCG 
AACCTGCTGT TCGCGCGGGA GCTGGACCGG CGGCTGGCGC GGTCCGGCGC GGACGTGACC 
TCCGTCGCTG CGCACCCCGG CGTCTCGCGG ACCGAGCTCA GCTCGACCAT GGCGAAGTCC 
CACCGGAACG CGCTGGTCGA GTGGGGCGGC AAGATCACCG ACGCGGTGTC CCAGACCCCG 
GCCATGGGCG CGTTGCCGCA GCTCTACGCG GCCACCGCGC CGCTGGTGAC CGGCGGCGGC 
TACTACGGCC CCGACGGGTT CGGCGGCTTC CGGGGCCACC CGGCGCCCGC GCGGTCGACG 
GCGGCGGGCC GCGACGACCT CGTGGCGGCC CGGTTGTGGG ACCTGACGGC CGAGTTGACG 
GGCGTCGCGC CCGACCCCGC GTGA
 
Protein sequence
MAKWTEVDIP DQAGRTALVT GANSGLGLRT AEVLAAKGAR VLLACRSGER GLAAVERVSR 
HGEAEFVRLD LGEPASVRAA AERVQELAGD GLDLLVNNAG LMAPPLARTA DGFESQFGVN 
HLGHAALTWL LMPALRARAG ARVVTVSSVA HRLGGLDLAD PNFEVRRYAP WVGYGQSKLA 
NLLFARELDR RLARSGADVT SVAAHPGVSR TELSSTMAKS HRNALVEWGG KITDAVSQTP 
AMGALPQLYA ATAPLVTGGG YYGPDGFGGF RGHPAPARST AAGRDDLVAA RLWDLTAELT 
GVAPDPA