Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1306 |
Symbol | |
ID | 8325485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 1441947 |
End bp | 1444025 |
Gene Length | 2079 bp |
Protein Length | 692 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 644941853 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_003099104 |
Protein GI | 256375444 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00348549 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGGTCGGCG CGGGTAGCGC GGACCCGGCC GCCGGGCGCC GCGAGCTGGC GCGCGCGTGG GCGCGGGAGC TGAAGGGCGC CGGGCGCGGC CCGATGTCGC CGGTGGAGCT GGAGCGGTTC CTGCTGGAGC TGGTGGAGCT GCTGCTGGAC GTGCTGGGAG CGCTTCCGTT CCGGGCGGCG GGCGCGGCCG AGGCGGGGCG GCGGCTGGTC GGGGCGCGGT TCACCGGCGC GGAGGCGCTG CGGCGCACCG TGCTGCTGCT CGGGCGGTCG CTGGCCGAGC ACGCGGACCG ACCTGGGCCG GACAGCGCGA GATCGGACAG CGCGGGGCCG GGGTTGGCCG AGCGGGTGGT GGCGGTGCTG GCCGAGCTGA GCGCCGGGTT CGCGGAGGCG CTGCGGCTGG ACGCGCTGGC GCAGCAGGAG GAGGTCCGCC TGGCGCTGCT GGCCGCGCGG CAGCGGGTGG AGCGGGTGCT GCGGCTGAGC GAGGCCCGGT TCCGGGAAGC GTTCGACTCC TCGGCGCTGG GCATCGCGAT CACCGACCTG CGCGGGATGT GCGTGCGCGC CAACGACTCC CTGGCGCGGA TGCTGGACGA GCCGAAGGAG GTGCTGGTCG GCCGCAGGCT GGTGGAGCTG TTCCACCCGG ACGACGCGGC GCCGCTGGGC GCGGCCTACC GGGCGGTGGC GGTGGGGCGG GTCGACCAGT TCCGGGAGCA GCGCAGGCTC GTGCGGGTGG ACGGCGACCC GGTGTGGGTG CACCTGGCGG TGTCGCTGCT GCGCGACGAG GACGGCAGCC CGGCGTTCCA CGTGACGATG GCCGAGGACG TCAGCGAGCT GCACCTGCTG CGCCGCAACC TGGACCACCA GCTGCTGCAC GACGCGCTCA CCGGCCTGTC CAACCGCCAG CACTTCACCA CCCGGCTGGA GGTGATGCTG AAGGCGTCGC GGGCCGGGAT CACGCTGTAC CAGCTGGACC TGGACGCGTT CTCGGTGGTG AACAACGGGC TGGGGCACGC CACCGGCGAC CGCGTGCTGG TGGAGGTGGC GCACCGGCTG CGCGGGGTGG TGGAGCGCGA GGAGGCGCTG GTCGCCCGGA TCGGCGGGGA CGAGTTCGCG CTGGTGGTGG ACAACTCGCC GACGACGCCG AGGGTGCCCG CGATGGTGGA GCGGGTGAAC GCGGCGCTGG CCGGGCCGCT GGAGTCCGGT GTGGAGCTGT CGGCGGCGAT CGGCGTGGTG GACCGCCCGG CGTCGGACTG GCCGGTCGTG GACCTGCTGC GGGCGGCGGA CTCGACGGTG CGGCGGGCGA AGTCGCTGGG CACCCGGCAG TGGCTGCCGT ACGACCGGGC CGAGGAGGCG CGGTCGCGGG AGCTGCTGGG CCGGGCGGCG CGGCTGCCGC GCGCGCTGGC GGCGGACGAG GTCGAGGTGG AGTACCAGCC GGTGGTGGAC CTGGCGACGG GCGAGCGGAC CGGGCTGCTG GCGCGGGTGC GCTGGGACGG GCTGGGGCAC GAGGAGTGCG CGGAGCTGGC GGAGGTGGGC GGCTCGTCGC CCGCGCTGGG CCTGTGGGCG CTGGAGCGGG CGGCGCGGGA GGCGGCGACC TGGGCGGGCT CGGTGCCGCT GCACGTGGAG CTGTCGCCCG CGCTGACCAC GGACCCGGAC CTGGTGGCGT CGGTGTCGCG GGTGCTGGCG GAGACCGGGC TGGCGCCGGG CGGGCTGAGG CTGCGGCTGC ACACGCGGGC GGCGCTGGTC GCGGAGGACG ACAACGCGCA GGTGCTGCGG GACAACGGCG TGACGACCGG TCTGTGGGCG TTCAACGGCG GTCAGGCGGA GCTGTCCCTG GTGGACGCGC TGGAGGTGGA CGCGCTGGTG TTCGAGCCCG CCGTGGCGCG CCGGTTGTCC GGGCAGGCGG TGGAGGGGCT GCTGCACCGG GCGATGGACG GGCTGGCGGC GGTGGTGCGG TCGGCCGGGG TGGAGATCGT GGCGCCGTGC GTGGACTCGG CGCAGGACCT GGCGTGGTGG CGGGGCGCGG GCGCGACGAG CGGGTTCGGC GAGCAGTTCG GCGGGCCGGT CGCGGGGCAC GAGCTGTGA
|
Protein sequence | MVGAGSADPA AGRRELARAW ARELKGAGRG PMSPVELERF LLELVELLLD VLGALPFRAA GAAEAGRRLV GARFTGAEAL RRTVLLLGRS LAEHADRPGP DSARSDSAGP GLAERVVAVL AELSAGFAEA LRLDALAQQE EVRLALLAAR QRVERVLRLS EARFREAFDS SALGIAITDL RGMCVRANDS LARMLDEPKE VLVGRRLVEL FHPDDAAPLG AAYRAVAVGR VDQFREQRRL VRVDGDPVWV HLAVSLLRDE DGSPAFHVTM AEDVSELHLL RRNLDHQLLH DALTGLSNRQ HFTTRLEVML KASRAGITLY QLDLDAFSVV NNGLGHATGD RVLVEVAHRL RGVVEREEAL VARIGGDEFA LVVDNSPTTP RVPAMVERVN AALAGPLESG VELSAAIGVV DRPASDWPVV DLLRAADSTV RRAKSLGTRQ WLPYDRAEEA RSRELLGRAA RLPRALAADE VEVEYQPVVD LATGERTGLL ARVRWDGLGH EECAELAEVG GSSPALGLWA LERAAREAAT WAGSVPLHVE LSPALTTDPD LVASVSRVLA ETGLAPGGLR LRLHTRAALV AEDDNAQVLR DNGVTTGLWA FNGGQAELSL VDALEVDALV FEPAVARRLS GQAVEGLLHR AMDGLAAVVR SAGVEIVAPC VDSAQDLAWW RGAGATSGFG EQFGGPVAGH EL
|
| |