| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1154 |
|---|
| Symbol | clpX |
|---|
| ID | 8325331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 1285906 |
|---|
| End bp | 1287186 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644941702 |
|---|
| Product | ATP-dependent protease ATP-binding subunit ClpX |
|---|
| Protein accession | YP_003098955 |
|---|
| Protein GI | 256375295 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.216313 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGTA TCGGTGACGG CGGCGACCTG CTGAAGTGCT CTTTCTGCGG CAAGAGCCAG
AAGCAGGTGA AAAAACTCAT CGCCGGTCCC GGCGTCTACA TCTGCGATGA GTGCATCGAC
CTCTGCAACG AGATCATCGA GGAAGAACTC GCGGAGGCGG GCGACGTCAA GCTCGACGAG
CTGCCCAAGC CCGCCGAGAT CCACGACTTC CTCGACCAGT ACGTGATCGG CCAGAGCGAG
GCCAAGCGGA CTCTCTCGGT GGCGGTCTAC AACCACTACA AGCGCATCCA GGCGGGTGAC
CGGGGGCGTG AGGGGCGGGA CGACGGGGTC GAGCTGGCCA AGTCGAACAT CCTCATGCTC
GGCCCCACCG GCTGCGGCAA GACCTACCTC GCGCAGACGC TCGCGAAGAT GCTGAACGTC
CCGTTCGCCA TCGCCGACGC GACCGCGCTG ACCGAGGCGG GCTACGTCGG CGAGGACGTC
GAGAACATCC TGCTCAAGCT CATCCAGGCG GCGGACTACG ACGTCAAGCG GGCCGAGACC
GGGATCATCT ACATCGACGA GGTCGACAAG ATCGCCCGCA AGAGCGAGAA CCCGTCGATC
ACCCGCGACG TCTCCGGCGA GGGCGTGCAG CAGGCCCTGC TGAAGATACT GGAGGGGACC
ACCGCGTCGG TGCCCCCGCA GGGCGGTCGC AAGCACCCGC ACCAGGAGTT CATCCAGATC
GACACGACGA ACGTGCTGTT CATCGTGGCG GGCGCCTTCG CGGGTCTCGA GAAGATCATC
CAGGACCGGA TCGGCAAGCG CGGTCTCGGC TTCGGCGCCG AGGTCCGCAC CAAGGCCGAG
GTCGACGCGG CGGACTACTT CGCCGAGTCG ATGCCGGAGG ACCTGATCAA GTTCGGGCTC
ATCCCGGAGT TCATCGGCCG GTTGCCGATG GTCGCCAGCG TGACGAACCT GGACCAGCCG
TCCCTGGTGC GCATCCTCAC CGAGCCGAAG AACGCCCTGG TCAAGCAGTA CCAGAAGCTG
TTCGAGATGG ACGGCGTTGA GCTGGAGTTC ACCAAGTCCG CGCTGGAGGC GGTCGCCGAC
CAGGCGATCC TGCGCGGCAC GGGGGCTCGC GGCCTGCGGG CGATCATGGA GGAGGTGCTG
CTGCCGGTGA TGTACGACAT CCCGAGCCGC ACCGACGTCG CCAAGGTCGT CATCACCGAG
CAGACGGTGA AGGAGAACGT GAACCCGACC ATCGTGTCCC GGCAGCCCAG CCGCCGGGAG
CGCCGCGAGA AGTCGGCCTG A
|
|---|
| Protein sequence | MARIGDGGDL LKCSFCGKSQ KQVKKLIAGP GVYICDECID LCNEIIEEEL AEAGDVKLDE
LPKPAEIHDF LDQYVIGQSE AKRTLSVAVY NHYKRIQAGD RGREGRDDGV ELAKSNILML
GPTGCGKTYL AQTLAKMLNV PFAIADATAL TEAGYVGEDV ENILLKLIQA ADYDVKRAET
GIIYIDEVDK IARKSENPSI TRDVSGEGVQ QALLKILEGT TASVPPQGGR KHPHQEFIQI
DTTNVLFIVA GAFAGLEKII QDRIGKRGLG FGAEVRTKAE VDAADYFAES MPEDLIKFGL
IPEFIGRLPM VASVTNLDQP SLVRILTEPK NALVKQYQKL FEMDGVELEF TKSALEAVAD
QAILRGTGAR GLRAIMEEVL LPVMYDIPSR TDVAKVVITE QTVKENVNPT IVSRQPSRRE
RREKSA
|
|---|
| |