Gene Amir_1130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1130 
Symbol 
ID8325305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp1258959 
End bp1260659 
Gene Length1701 bp 
Protein Length566 aa 
Translation table11 
GC content70% 
IMG OID644941676 
Productalpha amylase catalytic region 
Protein accessionYP_003098931 
Protein GI256375271 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCACCCC CTGCACGGAA GATCGCCCTG TTCGCCGCCG GAGCCCTGAT AGCCGGCGTG 
GTCGCCGCCG GGGCGACCCA GCTGGCCTCG ACCCCGCCCA CGGCCACCGC CACCCCGCCC
GGCGCCAAGA CCGTGACCGC GACCCTGTTC CAGTGGACCT TCGATCGCGT GGCCACCGAG
TGCGCCACCA CCCTCGGCCC CAAGGGCTAC GGCTACGTCG AGGTCTCCCC CGCCACCGAG
CACATCCAGG GCGGGACCTG GTGGACCTCG TACCAGCCGG TCAGCTACCG GATCGCCGGT
CGGCTCGGCA GCGAGGCCCA GTTCCGGAAC ATGGTCAGCG CCTGCCACAA CGCGGGCGTC
AAGGTCATCG CCGACGCGGT GATCAACCAC ATGTCGGCGG GCTCGGGCAC CGGGACCGGC
GGCACCCGGT ACACGAAGTA CGCCTACCCC GGTCACTACG GCGACCAGGA CTTCCACACC
TGCCGCACCG ACATCAACGA CTACCGCAAC CGGGACAACG TCCAGAACTG CGAGCTCAGC
GGCCTGTCGG ACCTCAACAC CGGCAGCGAG TACGTGCGCA GCGAGATCGC CGAGTACCTG
AACAACCTGC TGTCGATGGG CGTCGACGGC TTCCGGATCG ACGCGGCCAA GCACATGCCC
GCCGCCGACC TGTCCGCGAT CAAGGCGAAG CTGACCAAGC GCGACGCGTT CTGGGTGCAC
GAGGTCATCT ACGGCGCGGG CGAGGCGGTG CAGCCGGGCG AGTACACCGG GTCGGGCGAC
GTCGACGAGT TCCGCTACGC CTACGACCTC AAGCGCGTGT TCACCAGCGA GAACCTGGCC
TACCTGAAGA ACTTCGGCGA GGGCTGGGGG CACCTGCCGA GCGGGCAGGC GCGCCCGTTC
GTGGACAACT GGGACACCGA GCGCAACGGG TCGACGCTGT CGTACAAGGA CGGCTCGAAC
TACACCCTGG CGAACGTGTT CATGCTGGCC TGGCCGTACG GCTCGCCGCA GGTGTACTCG
GGCTACGAGT TCTCGAACAA GGACCAGGGC CCGCCCGCGC CCGGCGAGTG CTACAGCAGC
GGCTGGGAGT GCCAGCACCG GTGGCCGCAG ATCGCGAACA TGGTCGGCTT CCGCAACACC
ACCTCCGGCA CGGCCGTGAC GAACTGGTGG GACAACGGCC GCAACGCCAT CGCGTTCGGC
CGGGGCGACA AGGGCTACGC CGTGGTCAAC CGGGAGTCCT CGGCGGTGTC GCGGACGTTC
CAGACCTCGC TGCCCGCGGG CACCTACTGC GACGTGCAGC GCGACGGCTG CACGGCCACG
CACGTGGTCA ACTCGGCTGG GCAGTTCACC GCGACGGTGA ACGCCAACGA GGCGATCGCG
CTGCACGTGG GCGCCATGGG CAACGGGTCG AACCCCGGCG CGGGCGCGGC GGCGTTCTCG
GTGAACGCGA CGACGGTCAT GGGGCAGAAC ATCTTCGTGG TGGGCGACCA CGCCTCGCTG
GGCGGGTGGG ACCCGGCGCG GGCGGTGGCG CTGTCCTCGG CCTCGTACCC GCTGTGGAAG
ACCTCGGTGT CGCTGCCGAA CGGGACGGCG TTCGCCTACA AGTACATCCG CAAGGAGGCG
AACGGGTCGG TGACCTGGGA GAGCGGCGCG AACCGCACCT CGACCTCACC GGCGACGCTG
AACGACACCT GGCGGAACTA G
 
Protein sequence
MAPPARKIAL FAAGALIAGV VAAGATQLAS TPPTATATPP GAKTVTATLF QWTFDRVATE 
CATTLGPKGY GYVEVSPATE HIQGGTWWTS YQPVSYRIAG RLGSEAQFRN MVSACHNAGV
KVIADAVINH MSAGSGTGTG GTRYTKYAYP GHYGDQDFHT CRTDINDYRN RDNVQNCELS
GLSDLNTGSE YVRSEIAEYL NNLLSMGVDG FRIDAAKHMP AADLSAIKAK LTKRDAFWVH
EVIYGAGEAV QPGEYTGSGD VDEFRYAYDL KRVFTSENLA YLKNFGEGWG HLPSGQARPF
VDNWDTERNG STLSYKDGSN YTLANVFMLA WPYGSPQVYS GYEFSNKDQG PPAPGECYSS
GWECQHRWPQ IANMVGFRNT TSGTAVTNWW DNGRNAIAFG RGDKGYAVVN RESSAVSRTF
QTSLPAGTYC DVQRDGCTAT HVVNSAGQFT ATVNANEAIA LHVGAMGNGS NPGAGAAAFS
VNATTVMGQN IFVVGDHASL GGWDPARAVA LSSASYPLWK TSVSLPNGTA FAYKYIRKEA
NGSVTWESGA NRTSTSPATL NDTWRN