Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1130 |
Symbol | |
ID | 8325305 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 1258959 |
End bp | 1260659 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644941676 |
Product | alpha amylase catalytic region |
Protein accession | YP_003098931 |
Protein GI | 256375271 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCACCCC CTGCACGGAA GATCGCCCTG TTCGCCGCCG GAGCCCTGAT AGCCGGCGTG GTCGCCGCCG GGGCGACCCA GCTGGCCTCG ACCCCGCCCA CGGCCACCGC CACCCCGCCC GGCGCCAAGA CCGTGACCGC GACCCTGTTC CAGTGGACCT TCGATCGCGT GGCCACCGAG TGCGCCACCA CCCTCGGCCC CAAGGGCTAC GGCTACGTCG AGGTCTCCCC CGCCACCGAG CACATCCAGG GCGGGACCTG GTGGACCTCG TACCAGCCGG TCAGCTACCG GATCGCCGGT CGGCTCGGCA GCGAGGCCCA GTTCCGGAAC ATGGTCAGCG CCTGCCACAA CGCGGGCGTC AAGGTCATCG CCGACGCGGT GATCAACCAC ATGTCGGCGG GCTCGGGCAC CGGGACCGGC GGCACCCGGT ACACGAAGTA CGCCTACCCC GGTCACTACG GCGACCAGGA CTTCCACACC TGCCGCACCG ACATCAACGA CTACCGCAAC CGGGACAACG TCCAGAACTG CGAGCTCAGC GGCCTGTCGG ACCTCAACAC CGGCAGCGAG TACGTGCGCA GCGAGATCGC CGAGTACCTG AACAACCTGC TGTCGATGGG CGTCGACGGC TTCCGGATCG ACGCGGCCAA GCACATGCCC GCCGCCGACC TGTCCGCGAT CAAGGCGAAG CTGACCAAGC GCGACGCGTT CTGGGTGCAC GAGGTCATCT ACGGCGCGGG CGAGGCGGTG CAGCCGGGCG AGTACACCGG GTCGGGCGAC GTCGACGAGT TCCGCTACGC CTACGACCTC AAGCGCGTGT TCACCAGCGA GAACCTGGCC TACCTGAAGA ACTTCGGCGA GGGCTGGGGG CACCTGCCGA GCGGGCAGGC GCGCCCGTTC GTGGACAACT GGGACACCGA GCGCAACGGG TCGACGCTGT CGTACAAGGA CGGCTCGAAC TACACCCTGG CGAACGTGTT CATGCTGGCC TGGCCGTACG GCTCGCCGCA GGTGTACTCG GGCTACGAGT TCTCGAACAA GGACCAGGGC CCGCCCGCGC CCGGCGAGTG CTACAGCAGC GGCTGGGAGT GCCAGCACCG GTGGCCGCAG ATCGCGAACA TGGTCGGCTT CCGCAACACC ACCTCCGGCA CGGCCGTGAC GAACTGGTGG GACAACGGCC GCAACGCCAT CGCGTTCGGC CGGGGCGACA AGGGCTACGC CGTGGTCAAC CGGGAGTCCT CGGCGGTGTC GCGGACGTTC CAGACCTCGC TGCCCGCGGG CACCTACTGC GACGTGCAGC GCGACGGCTG CACGGCCACG CACGTGGTCA ACTCGGCTGG GCAGTTCACC GCGACGGTGA ACGCCAACGA GGCGATCGCG CTGCACGTGG GCGCCATGGG CAACGGGTCG AACCCCGGCG CGGGCGCGGC GGCGTTCTCG GTGAACGCGA CGACGGTCAT GGGGCAGAAC ATCTTCGTGG TGGGCGACCA CGCCTCGCTG GGCGGGTGGG ACCCGGCGCG GGCGGTGGCG CTGTCCTCGG CCTCGTACCC GCTGTGGAAG ACCTCGGTGT CGCTGCCGAA CGGGACGGCG TTCGCCTACA AGTACATCCG CAAGGAGGCG AACGGGTCGG TGACCTGGGA GAGCGGCGCG AACCGCACCT CGACCTCACC GGCGACGCTG AACGACACCT GGCGGAACTA G
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Protein sequence | MAPPARKIAL FAAGALIAGV VAAGATQLAS TPPTATATPP GAKTVTATLF QWTFDRVATE CATTLGPKGY GYVEVSPATE HIQGGTWWTS YQPVSYRIAG RLGSEAQFRN MVSACHNAGV KVIADAVINH MSAGSGTGTG GTRYTKYAYP GHYGDQDFHT CRTDINDYRN RDNVQNCELS GLSDLNTGSE YVRSEIAEYL NNLLSMGVDG FRIDAAKHMP AADLSAIKAK LTKRDAFWVH EVIYGAGEAV QPGEYTGSGD VDEFRYAYDL KRVFTSENLA YLKNFGEGWG HLPSGQARPF VDNWDTERNG STLSYKDGSN YTLANVFMLA WPYGSPQVYS GYEFSNKDQG PPAPGECYSS GWECQHRWPQ IANMVGFRNT TSGTAVTNWW DNGRNAIAFG RGDKGYAVVN RESSAVSRTF QTSLPAGTYC DVQRDGCTAT HVVNSAGQFT ATVNANEAIA LHVGAMGNGS NPGAGAAAFS VNATTVMGQN IFVVGDHASL GGWDPARAVA LSSASYPLWK TSVSLPNGTA FAYKYIRKEA NGSVTWESGA NRTSTSPATL NDTWRN
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