| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0759 |
|---|
| Symbol | |
|---|
| ID | 8324922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 837810 |
|---|
| End bp | 839711 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644941302 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_003098567 |
|---|
| Protein GI | 256374907 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00250463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCACGG CCACTGCGTC GATCAAGGAA ACGCTGGTCC GCAACGACCT GCGCAACGTG
GCGATCGTCG CGCACGTTGA CCACGGCAAG ACCACCCTGG TCGACGCCAT GCTCCGCCAG
TCAGGCGCCT TCTCCGAGCG CGCCGAGCTC GTCGACCGGG TCATGGACTC GGGCGAGCTG
GAGCGCGAGA AGGGCATCAC GATCCTCGCC AAGAACACGG CTGTGCGCAG GCACACGCCG
GACGGCGACA TCGTCATCAA CGTCATCGAC ACCCCCGGCC ACGCCGACTT CGGTGGTGAG
GTCGAGCGCG GCCTCTCCAT GGTCGACGGC GTCGTCCTGC TCGTCGACGC CTCCGAGGGC
CCGCTGCCGC AGACGCGCTT CGTGCTGCGC AAGACCCTCG CCGCGGGCCT CCCGGTCATC
CTGGTGGTGA ACAAGGTCGA CCGCCCCGAC GCCCGGATCT CCGAGGTCGT CGAGGAGGCC
CACGACCTGC TGCTCGACCT GGCCACCGAG GTCGGCGCCG ACGACTCCGT GCTCGACCTG
CCGGTCGTCT ACGCCTCGGC CCGCGCCGGT CGCGCCTCGC TGACCCAGCC CGAGGACGGC
GGCCTGCCGG ACGAGGAGAA CCTGGACAGC CTGTTCAAGG TCCTGTTCGA CTACATCCCG
GCCCCGACCG GCGACGCCGA CGCGCCGCTG CGCGCGCTGG TGACCAACCT GGACGCCTCG
ACCTTCCTCG GCCGCATCGC GATGTGCCGC GTCGCCGCCG GTCGGATGCG CAAGGGCGAG
ACCGTGTCCT GGTGCCGCGA GGACGGCTCG GTCCAGAAGG TGCGCATCAC CGAGCTGCTG
ATCACCGAGG CGCTGGAGCG CGTCCCCGCC GAGGAGGCCC GCGCGGGCGA CCTGGTGGCG
ATCGCGGGCA TCCCGGAGAT CACCATCGGC GACACCCTGG CCGACGTCGA CAACCCGGAG
CCGCTGCCCC GGATCACCGT CGACGAGCCC GCCATCTCGA TGACCATCGG CGTCAACACC
TCGCCGCTGG CCGGTCGCAA CGGCGGCACC AAGCTCACCG CGCGCGTCCT CAAGGCCCGC
CTGGACTCCG AGCTGGTCGG CAACGTGTCC GTCCGCGTGC TGCCCACCGA GCGCCCCGAC
ACCTGGGAGG TGCAGGGCCG AGGCGAGCTG GCGCTGGCCA TCCTGGTCGA GCAGATGCGC
CGCGAGGGCT TCGAGCTCAC CGTCGGCAAG CCGCAGGTGG TCACCAGGCA GGTCGACGGC
AAGACCCACG AGCCGTTCGA GCGCCTGACC ATCGACGCCC CCGAGGAGCA CCTCGGCGCC
ATCACCCAGC TCCTGGCGAA CCGCAAGGGC CGCATGGAGA CGATGGACGG CCACGGCACC
GGTCGCATCA AGCTCGACTA CGTCGTGCCC TCGCGCGGCC TGATCGGCTT CCGCACCGAG
TTCCTCACCG AGACCCGCGG CACCGGCATC GCGAACGCCG TCGCCGAGGG CTACGGCCCG
TGGGCGGGCG AGATCCGCAC CCGCCACAAC GGCTCGCTGG TCGCCGACCG CACCGGCTCG
ATCACCGCCT ACGCGATGAT CCAGCTCGCG GACCGCGGCA CGTTCTTCGT GGAGCCCGGC
GCGGACGCGT ACGAGGGCAT GGTCGTCGGC GAGAACCCGC GCGCCGAGGA CCTGGACGTC
AACGTCTGCC GCGAGAAGAA GCTGACCAAC ATGCGCACCT CGACCGCCGA CGTCATGGAG
ACGCTGGCCC GGCCGAGGAA GCTGTCGCTG GAGGAGGCGC TGGAGTTCTG CGCCGCCGAC
GAGTGCGTCG AGGTCGCGCC GGAGGTCGTC CGGGTCCGCA AGGTCACCCT GGACGCCAAC
CAGCGCGGTC GCGAGCGCAA CCGCGCCAAG CTGCGCGGCT GA
|
|---|
| Protein sequence | MPTATASIKE TLVRNDLRNV AIVAHVDHGK TTLVDAMLRQ SGAFSERAEL VDRVMDSGEL
EREKGITILA KNTAVRRHTP DGDIVINVID TPGHADFGGE VERGLSMVDG VVLLVDASEG
PLPQTRFVLR KTLAAGLPVI LVVNKVDRPD ARISEVVEEA HDLLLDLATE VGADDSVLDL
PVVYASARAG RASLTQPEDG GLPDEENLDS LFKVLFDYIP APTGDADAPL RALVTNLDAS
TFLGRIAMCR VAAGRMRKGE TVSWCREDGS VQKVRITELL ITEALERVPA EEARAGDLVA
IAGIPEITIG DTLADVDNPE PLPRITVDEP AISMTIGVNT SPLAGRNGGT KLTARVLKAR
LDSELVGNVS VRVLPTERPD TWEVQGRGEL ALAILVEQMR REGFELTVGK PQVVTRQVDG
KTHEPFERLT IDAPEEHLGA ITQLLANRKG RMETMDGHGT GRIKLDYVVP SRGLIGFRTE
FLTETRGTGI ANAVAEGYGP WAGEIRTRHN GSLVADRTGS ITAYAMIQLA DRGTFFVEPG
ADAYEGMVVG ENPRAEDLDV NVCREKKLTN MRTSTADVME TLARPRKLSL EEALEFCAAD
ECVEVAPEVV RVRKVTLDAN QRGRERNRAK LRG
|
|---|
| |