Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_0729 |
Symbol | ispH |
ID | 8324892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 805781 |
End bp | 806725 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644941273 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_003098538 |
Protein GI | 256374878 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAAGC GAGTGCTCCT GGCCAATCCG CGCGGGTACT GCGCGGGCGT TGACCGCGCA GTCGTCACGG TGGAGAAGGC GCTGGAGAAG TACGGCGCGC CGGTGTACGT CCGCAAGGAG ATCGTCCACA ACAAGCACGT CGTGGAGACG CTGTCGAAGC GCGGCGCGAT CTTCGTCAAC GAGACCGACG AGGTGCCCGA GGGCGCGCTG GTGGTGTTCT CCGCCCACGG CGTCTCGCCC AAGGTGCACG AGGAGGCCGC CGACCGCAGC CTGCGCACCA TCGACGCCAC CTGCCCCCTG GTGACCAAGG TCCACAAGGA GGCCCAGCGG TTCGCGCGCG AGGACTACGA CATCCTGCTC ATCGGCCACG AGGGCCACGA GGAGGTCGAG GGCACCGCCG GTGAGGCGCC CGACCACATC CAGCTCGTGG ACACCGCCGA GGACGTCGCC AAGGTCGAGG TGCGCGACCC GTCCAAGGTG ATCTGGCTGT CGCAGACCAC GCTGTCGGTC GACGAGACCA TGGTGCGGGT GCGCCAGCTC AAGGAGCGGT TCCCCGACCT GCAGGAACCG CCGTCGGACG ACATCTGCTA CGCCACCTCC AACCGGCAGG TCGCGGTGAA GACCATGGCG CCCGAGTGCG ACCTGGTGCT GGTGGTCGGC TCGAAGAACT CGTCCAACTC GGTGCGGCTG GTCGAGGTCG CGCTGCAGGC GGGCGCGAAG GCCTCCTACC TGATCGACTA CGCCGAGGAG GTCGACGAGG CCTGGCTGGA GGGCGTCGGC ACGGTCGGCG TGACCAGCGG CGCCTCGGTG CCGGACATTT TGGTGATGGA CCTGCTCAAG CACCTGGCCG AGCGCGGCTA CGGCGACGTG GAGGAGATCA CCACGGCCAA CGAGAAGATC GCGTTCTCGC TGCCGCGCGA GCTGCGCAAG GACTCGGTGC GCTAG
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Protein sequence | MDKRVLLANP RGYCAGVDRA VVTVEKALEK YGAPVYVRKE IVHNKHVVET LSKRGAIFVN ETDEVPEGAL VVFSAHGVSP KVHEEAADRS LRTIDATCPL VTKVHKEAQR FAREDYDILL IGHEGHEEVE GTAGEAPDHI QLVDTAEDVA KVEVRDPSKV IWLSQTTLSV DETMVRVRQL KERFPDLQEP PSDDICYATS NRQVAVKTMA PECDLVLVVG SKNSSNSVRL VEVALQAGAK ASYLIDYAEE VDEAWLEGVG TVGVTSGASV PDILVMDLLK HLAERGYGDV EEITTANEKI AFSLPRELRK DSVR
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