| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0658 |
|---|
| Symbol | |
|---|
| ID | 8324819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 726256 |
|---|
| End bp | 727899 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644941200 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_003098467 |
|---|
| Protein GI | 256374807 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGCGC TCCAGGAGAT GTCCGACGCC TGGCTGGTCG GCCGCGCCAG CGAGCTGGTC
GCGGTGGCGC AGAGCAGCCA CGTCGCCGAG CAGCTCGACG CCGCGAACGA GGTCGACGAG
ATCCTCGCCG AGGCGCAGAG CCGGGGCGAG CCCAGGATCG TGGCGCAGCT GCTGCGCGCC
GCCGCCGTCG TGCGCCTGGT GACGCCGGGG GTCGGCGACA TGTCGGACTC CCTGCTGGAG
GAGATGCTCA CCCACACCCG CAGGCACGGC CTGGTGGTGC TGGAGGCGGA GGCGCACGCC
CTGCTCGGCC GCAGGTACCT GCTGGTCGGG CTGGAGGACA AGGCGCTCAG CGAGATCGCC
AACGGGCTGG CGATGCTGGA GGAGGACCTC ACCCCGGACC CGGTGCTGGA CAAGCGCACC
TGGGACCGCC TGCTGGCCTC GGCGCTGCAG AACACCGGTT TAGTGCTCAC CCAGCTCGGC
GTCTACGAGA TGGCCGACGA GGTCCTGGCC AGGGCCCACA ACGCGATCCG CGACAGCGCC
AACCCCCACC TGATCTACGT GCACCTGGTG AACCGGGTGC GGATGCTGCT GGGCTGGGGG
CTGCGGCTGG AGCGGGTGAA CAACCACGAG GAGGCCGCCG CCCGGTTCAC CATGGCCGCG
CGGATCGCCG AGGCGACCGA GGCGCCGTTC CTGCAGTCGC TGCACCCGCG CAGGCGGGAC
CGCACCGCCG CGCAGCAGGT GCCGGTGATC GGCGCCGCGC AGGCGCTGGC GAGCCCCGGC
CCCGAGCACA TCGCCCGGCT GTGGACGCTG CGCGAGCTGT CCATGTACGC CCGCGAGCTG
ATCATCGTGT CGATCGCGCT GGCGCGCTGC CTGGAGATGG AGGAGCTGCC GCAGCAGGCC
CTGCAGGTGC TCACGCACGC CCGCACGAAG CTGGCCACCG ACACCTCCGA GCCGACGCTG
ATGCTGTGCC TGGTGCGCGA GTACGCCCGG CTGGCGGGCC CGCAGGGCGA GCACACCGTC
TCGGCGCTCC AGACGTACGC GAGCGCGCTG GAGGTGGAGC TGTGGCTGAT GCAGGAGGCC
CGCACCGCCA CGCTGATCAC CCGGCGCGAC CACGAGCGGC TCACCAGGGC GCACGGGGCG
ATCGCCCAGC AGGCGATGCA GGACCCGCTG ACCGGGTTGC CGAACCGGCG CGCGCTGGAC
GAGCGGCTGG CCGCGCTGGT CGCCGCGCAG ACCCTGCCGA TGGCGGTGGC GCTGGTCGAC
CTGGACGGGT TCAAGGGCGT CAACGACAAG CACTCGCACG CGGAGGGTGA CGACGTCCTG
CGCGTGATTG CCAGCACACT GCGGCACGCG CTGCGGGGCG ACGACATGGT GGCCCGGTAC
GGCGGCGACG AGTTCGTGGT GCTGCTGCCG GGGACCACCC TGTCGCTGGC CGAGGCGGCG
CTGGCCAGAG CCGTGGACGC CGTCGCTGGC CTGCCATCCG ACCTGTCCAG GGGGGTGACG
CTGTCGGTCG GGGTGATCGC GGTGCGCCCC CAGGAGAGCG ACAACCAGGC GCTGTCCAGA
GCGGACTCCG CGATGTACAC CGCGAAGCGC AGAGGTGGCT GCCAGGTTGC TTCGGCAGAC
GGGGAAGCAC CCGCGGAGGC TTAG
|
|---|
| Protein sequence | MPALQEMSDA WLVGRASELV AVAQSSHVAE QLDAANEVDE ILAEAQSRGE PRIVAQLLRA
AAVVRLVTPG VGDMSDSLLE EMLTHTRRHG LVVLEAEAHA LLGRRYLLVG LEDKALSEIA
NGLAMLEEDL TPDPVLDKRT WDRLLASALQ NTGLVLTQLG VYEMADEVLA RAHNAIRDSA
NPHLIYVHLV NRVRMLLGWG LRLERVNNHE EAAARFTMAA RIAEATEAPF LQSLHPRRRD
RTAAQQVPVI GAAQALASPG PEHIARLWTL RELSMYAREL IIVSIALARC LEMEELPQQA
LQVLTHARTK LATDTSEPTL MLCLVREYAR LAGPQGEHTV SALQTYASAL EVELWLMQEA
RTATLITRRD HERLTRAHGA IAQQAMQDPL TGLPNRRALD ERLAALVAAQ TLPMAVALVD
LDGFKGVNDK HSHAEGDDVL RVIASTLRHA LRGDDMVARY GGDEFVVLLP GTTLSLAEAA
LARAVDAVAG LPSDLSRGVT LSVGVIAVRP QESDNQALSR ADSAMYTAKR RGGCQVASAD
GEAPAEA
|
|---|
| |