| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0444 |
|---|
| Symbol | |
|---|
| ID | 8324603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 480441 |
|---|
| End bp | 481046 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644940988 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003098257 |
|---|
| Protein GI | 256374597 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0734207 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGCGAGC TGCGCATGAC CGGTGAGCGC CCACCGTGGG AAGGGCTCGA CGGCACGGAC
CGGCACGAGG TCTGCGTCAT CGCCGCCCGC TCGGGCGATC GCCGGGCGCT GGACGTGCTC
ATCCACGACC TGACCCCGCT GGTCTGGCAC GTGGCGCGGG GGCACGGGCT GGACCGGAGC
ACGGCCGAGG ACGTCGTCCA GACCGTGTGG CTGGCCCTGC TCCGGAACCT GGGGCGGATC
ACCCAGCCCA GGGCGCTGGC CGGGTGGCTG GTGGTCGCCA CGCGCCGCGA GGCGCAGCGG
ACCTGGACGC CGTCGCGGCG CGAGTCGTCG CTGTCCGACG AGATGGCGGA GCAGCAGGAG
AGCCACATCG GACTGCCCGA GGACGCCGCG CTGGTCGACG ACCGCGACCA GCGCTTGTGG
CGCGCCTTCG GGAAGCTGTC GCAGCGGTGC CAGGAACTGC TGCGGCTCAC CGTCCTCGCC
GGGCGGGCGG AGTACCGCGC GGTGGCGGAA GCACTGTCCA TGCCCCGCGG CAGCATCGGC
CCCACCAGGG GTCGGTGCTT GGGCACGCTG CGGGCGCATC TCGAAGCGGA AGGAGGATCG
CGGTGA
|
|---|
| Protein sequence | MGELRMTGER PPWEGLDGTD RHEVCVIAAR SGDRRALDVL IHDLTPLVWH VARGHGLDRS
TAEDVVQTVW LALLRNLGRI TQPRALAGWL VVATRREAQR TWTPSRRESS LSDEMAEQQE
SHIGLPEDAA LVDDRDQRLW RAFGKLSQRC QELLRLTVLA GRAEYRAVAE ALSMPRGSIG
PTRGRCLGTL RAHLEAEGGS R
|
|---|
| |