| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0418 |
|---|
| Symbol | |
|---|
| ID | 8324577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 453918 |
|---|
| End bp | 454655 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644940962 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003098231 |
|---|
| Protein GI | 256374571 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00843006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGGCG TGTTGCAGGA CAAGGTGGCC GTGATCACCG GGGGCTCCAG CGGGATCGGG
CTGGCCATGG CCCACCGGTT CGCCGCCGAG GGCGCGCGGG TCTTCGTCAC CGGGCGGGAC
GCCGCGCGGC TCGACGCCGC CGTCGCCGAG ATCGGGGACG CCGCCACCGG GGTGCGGGCC
GACGTCGCCG ACCCGGCCGC GCTGGACGCG CTCTACGAGC GGGTGCGGGC CGAGGCCGGG
CGGGTCGACG TGCTGGTCGC GAACGCGGGC CTGGCGGCCG ACGCCCCGCT CGGCGAGCAC
ACCGAGGAGG GCGTCGACCT CACCCTCGCG GTGAACGTGA AGGGCACGCT GTTCACCGTC
CAGAAGGCGC TGCCGCTGCT GTCGGCGGGC GCGTCGATCA TCGTGATCGG GTCCAGCAAC
AGCACCCGGC CCAACCCGCT CCTCGCGGTG TACAGCGCGT CCAAGGCCGC GGTGCGGAAC
CTGGTGCGCA ACTGGGCGGC GCAGTCGAAG GACCGGCAGT TCCGGATCAA CGTGCTCAGC
CCCGGCCCCA CCCGCACGCC CGGCCTGATG AGCGCGGGCG GGCCGATGAT CGAGCAGTAC
GTGCGGGAGC AGGTGCCGCT GGGGCGGATG GCCGAGCCGG AGGAGATCGC GTCGGCGGCG
CTGTTCCTGG CCTCGGACGC CTCCTCGTTC GTCACCGGCG TCGAGCTGTT CGCGGACGGC
GGGCAGGCGC AGGTCTGA
|
|---|
| Protein sequence | MPGVLQDKVA VITGGSSGIG LAMAHRFAAE GARVFVTGRD AARLDAAVAE IGDAATGVRA
DVADPAALDA LYERVRAEAG RVDVLVANAG LAADAPLGEH TEEGVDLTLA VNVKGTLFTV
QKALPLLSAG ASIIVIGSSN STRPNPLLAV YSASKAAVRN LVRNWAAQSK DRQFRINVLS
PGPTRTPGLM SAGGPMIEQY VREQVPLGRM AEPEEIASAA LFLASDASSF VTGVELFADG
GQAQV
|
|---|
| |