| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0370 |
|---|
| Symbol | |
|---|
| ID | 8324528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 400639 |
|---|
| End bp | 403167 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 842 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644940914 |
|---|
| Product | trehalose-phosphatase |
|---|
| Protein accession | YP_003098184 |
|---|
| Protein GI | 256374524 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.604307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACGGCCG AGGCCCTCCC CGCCGAACTT CGTCGAGCCA TCGTCCAGCT CGCCAGGACA
CCACGACTGC TGGTGGCCTG CGACTACGAC GGCACCCTGG CTCCGATCGT GGAGAACCCC
GAAGACGCCC GACCGCTGCC GGAGGCGGTG GGCGCGCTGC GCTCGCTCGC CGGGCTGCAC
GAGACGACGA CCGCCGTGAT CTCCGGGCGC GCGCTGCGCG ACCTGGCGAC GCTGTCCAGG
CTGCCCGCGG AGGTGCACCT GGTCGGCTCG CACGGCTCCG AGTTCGACGT CGGCTTCGTG
CACGCGCTGG ACGCGGACGC CAGGGCGTTG CACCGCAGGC TGGAGGACGA GCTCGAGAAG
CTCGTCGACG GCAGCGAAGG CGTTTCACTG GAGATCAAGC CCGCCAGCAT CGCCGTGCAC
GTGCGGCGAG CGCCCGCCGA GGTCGGCGAG CGCGTGCTGG AGGCGGTGCG CACCGGTCCC
TGCACGTGGG GCGGCGTGCA GGTCACCGAG GGCAAGGCCG TGGTGGAGCT CGCCGTGGTG
CAGACCGACA AGGGCCACGC CCTCGACGTC CTGCGCCACC GCGTGTCCGC CACGGCGTCC
GTGTTCGTCG GCGACGACGT CACGGACGAG AAGGCGTTCG CCCGGTTGTC CGGGCCGGAC
GTCGGCATCA AGGTCGGCGA CGGCGAGACG CTGGCGCAGT ACCACATCAC CGACTCGCCC
GACGTGTCGA TGGTGCTGGC GCTGCTGCTG GAGGAGCGCA GGAACTGGCT GCACGGCGAC
CAGGCCGTGC CGATCGAGCG GCTGACCATG CTCGCCAACG AGCGGTCGGT CGCGCTGGTC
ACCCCGGACG CCAGGGTGAA CTGGCTGTGC CACCCGGAGC CGGACTCGGC GGCGGTGTTC
GCCGACCTGC TCGGCGGCCC GTCCGCGGGC CACTTCACGA TCAAGCCGGA GCACGGCTCG
CTGCCCCTGG GCCAGCGGTA CGTGCCGGGC ACGATGGTCG TGGAGACCCG GTGGTCGCGG
CTGCTGGTCA CCGACTACCT GGACCACGAC CTGCCGGGCC ACCGCACCGA CCTGGTGCGG
CGGATCAGCG GGTCCACGAA CGCGGTCATC ACCTTCGCGC CCCGGCCCGA GTTCGGGCAG
GTGCCGGTGC GGCTGCTGCG CGAGCGCGAC GGCCTCCGGG TCGCGGGCAC CTCGGAGCCG
ATGGTGCTGC GCTCGCCGGG CGTGGACTGG GAGATCACCA GCGACGGCGT CCAGGAGACC
GCGGTCGCGG TCGTGCGGCC GAGGGAGGGC GCGGCGATCC TGCTGGAGCT GCGCTGCGGC
ACGGACGACC TGTCCGAGAG CACGCTGGGC GAGCCCGAGC GGCGCGCCCG CGCGGGCGGG
TTCTGGTCGG ACTGGGCGGC GACGCTGAAG CTGCCGTCGG TCGAGCCGGA GCTGGTGCTG
CGGTCGGCGC TGACCCTCAA GGGCCTGGTG CACCACGAGA CCGGGGCCAT CATGGCGGCG
GCGACCACGT CGCTGCCCGA GGAGCTCGGC GGCATCCGGA ACTGGGACTA CCGCTACTGC
TGGCTGCGGG ACGCGGCGCT GACCGCGCAG GCGCTGGTGT CGGTCGGCTC GCTGACCGAG
GCCGAGGCGT TCCTGGGCTG GGTGCACGGC GTGCTGGACA CGCTGCCCGG CCCGGAGCGG
CTGCACCCGC TGTACACGCT GCAGGGCACC ATGCTGGGCG CCGAGGCGGT CATCGACACG
CTGCCCGGCT ACGCGGGGTC GCGGCCGGTG CGCGTGGGCA ACCTGGCGAA CCAGCAGGTG
CAGCTGGACG TGTTCGGGCC CGTCGTGGAC CTGGTCGCCG AGCTGGCGAG CGCGCGCGGC
GCGCTCACCG ACGAGGACTG GCGGATGGTC CAGGCCATGG CGGAGGCCGT GGCGCGGCGG
TGGCACGAGC CGGACCACGG CATCTGGGAG GAGCGGCACG CTCCCAGGCA CCACGTGTAC
TCGAAGGTCA TGTGCTGGGT CACGCTGGAC CGCGCGGTGC GGCTGGCCGA GCAGTACGGG
CGCGCGCTCG ACCCGTCGTG GCCGGTGCTG CGGGACACGA TCGCCACGGA CGTGCTGAAG
AACGGGTGGA GCGACGTCGC CCAGTCCTTC ACGACCGCGT ACGACGGCGA CGACCTGGAC
GCGGCCTCGC TGCACGTGGG GCTGGCCGGG CTGATCGACC CGGCGGACGA GCGGTTCCAG
GCCACGGTCA CCGCGATCGA GGCGGAGCTG CGGTCCGGGT CCACGGTCTA CCGGTACCGG
CGCGACGACG GTCTTCCCGG CGACGAGGGC GGGTTCCACC TGTGCGCCGC GTGGATGATC
GAGTCGTACC TGCTGACCGG TCGGCGGACG GAGGCCGAGG AGCTGTTCGC GCAGATGGTC
GACGCCGCCG GGCCCACCGG GCTGCTGCCG GAGGAGTACG ACCCGATCGC GGAGCGCTCG
CTGGGCAACC ACCCGCAGGC GTACAGCCAC CTCGGGCTGA TCCGGTGCGC GCAGCTGCTG
GCGAAGTGA
|
|---|
| Protein sequence | MTAEALPAEL RRAIVQLART PRLLVACDYD GTLAPIVENP EDARPLPEAV GALRSLAGLH
ETTTAVISGR ALRDLATLSR LPAEVHLVGS HGSEFDVGFV HALDADARAL HRRLEDELEK
LVDGSEGVSL EIKPASIAVH VRRAPAEVGE RVLEAVRTGP CTWGGVQVTE GKAVVELAVV
QTDKGHALDV LRHRVSATAS VFVGDDVTDE KAFARLSGPD VGIKVGDGET LAQYHITDSP
DVSMVLALLL EERRNWLHGD QAVPIERLTM LANERSVALV TPDARVNWLC HPEPDSAAVF
ADLLGGPSAG HFTIKPEHGS LPLGQRYVPG TMVVETRWSR LLVTDYLDHD LPGHRTDLVR
RISGSTNAVI TFAPRPEFGQ VPVRLLRERD GLRVAGTSEP MVLRSPGVDW EITSDGVQET
AVAVVRPREG AAILLELRCG TDDLSESTLG EPERRARAGG FWSDWAATLK LPSVEPELVL
RSALTLKGLV HHETGAIMAA ATTSLPEELG GIRNWDYRYC WLRDAALTAQ ALVSVGSLTE
AEAFLGWVHG VLDTLPGPER LHPLYTLQGT MLGAEAVIDT LPGYAGSRPV RVGNLANQQV
QLDVFGPVVD LVAELASARG ALTDEDWRMV QAMAEAVARR WHEPDHGIWE ERHAPRHHVY
SKVMCWVTLD RAVRLAEQYG RALDPSWPVL RDTIATDVLK NGWSDVAQSF TTAYDGDDLD
AASLHVGLAG LIDPADERFQ ATVTAIEAEL RSGSTVYRYR RDDGLPGDEG GFHLCAAWMI
ESYLLTGRRT EAEELFAQMV DAAGPTGLLP EEYDPIAERS LGNHPQAYSH LGLIRCAQLL
AK
|
|---|
| |