Gene Amir_0095 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0095 
Symbol 
ID8324241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp103158 
End bp106223 
Gene Length3066 bp 
Protein Length1021 aa 
Translation table11 
GC content77% 
IMG OID644940634 
ProductABC transporter, CydDC cysteine exporter (CydDC- E) family, permease/ATP-binding protein CydD 
Protein accessionYP_003097915 
Protein GI256374255 
COG category[O] Posttranslational modification, protein turnover, chaperones
[C] Energy production and conversion 
COG ID[COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 
TIGRFAM ID[TIGR02868] thiol reductant ABC exporter, CydC subunit
[TIGR02857] thiol reductant ABC exporter, CydD subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCTTCC CCGGTGACCT TCCCGCCAGG AAAAAGCCGG GGCGGGGCCC GCTCGGCGCG 
CTGCCGAAGC TGTCCGGTTC AGCGCGCCGG GCCCTGGTCC TGTGCGCCTT CCTCGCCGCC
TGCACGGCCG TCGCGCTCGT GGCGCAGGCG GTCACCCTCG GCACCGCGCT CGCCGACCTC
GTCGCGGGCG GCTCGCCGCT GCTGTGGCCG ATCGCCGCGA CCGTGCTCGC CCGCGCCCTG
CTCGCCTGGG CCACCGAGTC CGCCGCCGCC CGCGCCGCCG CCGGGGCCAA GGAGGAGCTG
CGCGCCGCCC TGCTCGACCG CTCGCTCGCC AACGGCCCGG AGTGGATCAC CGGTCGCGGC
CCGGCCGAGC TGACCGCGCT GGCCACCAAG GGGCTCGACG CGCTCGACGC CTACTTCACC
CGATACCTGC CCGCCCTGGT GACCACGGCC GTCGTGCCGC CCGCCGTGGG CCTGTGGATC
CTGATCAGCG ACCCCACCTC CGCGGTGCTG ATCGCCATCA CCATCCCGCT GATCCCGATG
TTCGCCATCC TGATCGGCAA GTTCACCGAG CAGAAGGTCG CCGCGGTCGC GACCACCACC
GAGAAGCTCT CCGCCCGGCT GCACGAGCTG GTCCGCGCCC TCCCGGTGCT CACCGCGTTC
GGCCGCGCCC AGGCCCAGGC CGAGGCGGTC CGCCGCACCG GCGACGCCCA CCGCAGGGCC
ACCATGGGCA CGCTGCGCGT GGCGTTCCTG TCCGCGCTGG TGCTGGAGAT CGCCGCGTCG
CTGTCGGTCG CGCTCATCGC GGTCGGCATC GGCGTGCGCC TGGTCTACGG GGACATGAGC
CTGGCGACCG GCCTGATCGT GCTGATCCTG GCCCCCGACT GCTACCTGCC GCTGCGCAAC
GCGGGCGCCG CCCACCACGC CAGCGAGGAT GGCCTGGAGG CGGTCCGCCG GGTCGCCGAG
GTCGTGGACT CCCCGCGGGC GGAGGTCACC GTCCCCGAGG CAGGCGAGAC CGGCGTGGAG
GTGCGCGACC TGCGCGTCGA GCGGCGCGGC GGGTTCGCCC CCGACGGGCT CAGCTTCACC
GTCCGGCCGG GGCAGGTGCA CCACCTGGAC GCCCCCAGCG GGCGCGGCAA GTCCACCACC
ATCGCCGCCC TCCTCGGCTT CCTCGCCCCC ACCTCCGGCG AGGTCCGGGT GCGCGGCAGC
GTCGCCTGGG TGCCGCAGCG GCCCGCGTTC GCCGCCCGCA CCGTCGCCGA GGAGCTGGAG
CTGACCACCG GGCGCGTCGA CCACGAGGTG CTGCGGCGGG TCGCCGCCGA GCACCTGGTC
GACCGGCCGG TCGCCGAGCT GTCCACCGGC GAGCGGCAGC GCGTCGCCGT GGCGCGGGCG
CTGAGCACCG GCGCGGACGT GCTGCTGCTC GACGAGCCGA CCGCCCACCT CGACCCGGCC
ACCGCCGCCA AGGTCATGGC CGCGATCACC GCCGCCGCCG AGGGCGGGGC CGCCGTCGTG
CTGGCCACCC ACCGGCTCGC CGAGGCCGCC GACACCGACG ACGACACCAC CGCCGTGCGC
GCCGCCGACC GCGAGCCCAC CACCCCGCGC ACCCCGCGCC CCACCCGCCT GCTGCTCGGC
GGCGCCGCGA TCGGCACGGC CGCGCTGCTC AGCGGCGTCG CCCTCACCGC CCTGTCGGCC
TACCTGATCG CCAAGGCCTC CACCCAGCCG CCGATCCTCA CCCTGTCCGT GATCACCGTG
GGCGTGCGGG CCTGCGCGCT GGCCAAGGGC GTGCTGCGCT ACCTGGAGCG GCTCGTCACG
CACGACGCCG CGTTCCGGTT CGCCGACGCG CTGCGCATCG ACATGTGGCG CAACCTGCGC
CCCGGCCGGG CCGAGCTGAC CCGGCTGGTG GACGACACCG ACACGGTCCG CGACCTGGTG
CCCAGGGTGC TCCAGCCGCC GCTGGCCGCC GCGGGGGTCG GCCTGGCCGC CGTGGTCCTG
CTCACCGCCA TCCAGCCGGT CGCCGGTCTC GCGCTGGCGG TGCTCCTGCT GGTCGGCGGG
CTCGCCGCGC CGCTGCTGGC CGCCGCGCTC GACCGCCGCG CCACCACCGC CCTGGCCAGG
GGCCGCCGCC GGGTCTCCGA GGACGTGCTG ACCCTGCTCA CCGCCGCCCC CGACCTGATC
GCGTTCCGCG CCGAGGGCCG CTACCGGGCC GGGCTCGCCG CCGTCGACGC CGAGCTGGCG
CGGCAGACCC GCCGCCAGGC GTTCGGCGCG GGCGCGGCCA CCGGCCTGAT CACCCTCGCC
ACCGGCCTGG CCGCCGTCGT GTGCACCGCG CTGGCAGGCG ACGTCAACCC GCTGCTCGTC
CCCGTGCTGG GCCTGGTGCC GCTGGCGCTG GTCGAGACGC TGAGCACGCT GCCCGCCGCC
GCCCAGCACC GCGCCGCGCT GCGCGAGGCC TACGGCCGCG TCACCGAGCG GCACCCCGAG
GTGAGGCCGG GGACCGGACC CGCCAAGCTG GAGAACGTGG ACGTCCGCTG GCCCGGTGCG
GCCGAACCCG TGCTCCGGGA CTTCACCCTG ACCCCCGGCG TCGGCGAGCG GATCGCCGTC
GTCGGCCCGT CCGGCGCGGG CAAGTCCACG CTGTTCGCGC TGCTCCTGGG CTTCCTGGAG
CCCGAGCGCG GCCGGGTCAG CCGCCCCGAG CGCGTCGCCT GGTGCCCGCA GGAGCCGATG
CTGGTGTCCA CCACGCTCAG GGAGAACCTC AAGCTCGGCG ACGCGCACGC GGACGACGAC
CGGCTCCGCG AGGCCCTGGT CACCGCCGGG CTGCCGGAGT GGGTCGACCG GCTCGACACG
ATGATCGGCC CCACGCTGCT CTCCGGCGGC GAGGCCCAGC GCGTCGCGCT GGCCAGGGCG
CTGCTGCACG ACGCCGACCT GGTGCTGCTC GACGAGCCGA CCGCGCACCT GGACCGCCCC
ACGGCCGAGG CCCTGCTCGA CCGGCTCGAC GTGGCGCTGA AGGGGAAGAC CGTGGTCCAC
ATCACGCACC GGCCCGAGGA GACCAGGCAC GCCGACCTGG TCCTGTCGAT GCGGCCCGCC
CGGTGA
 
Protein sequence
MSFPGDLPAR KKPGRGPLGA LPKLSGSARR ALVLCAFLAA CTAVALVAQA VTLGTALADL 
VAGGSPLLWP IAATVLARAL LAWATESAAA RAAAGAKEEL RAALLDRSLA NGPEWITGRG
PAELTALATK GLDALDAYFT RYLPALVTTA VVPPAVGLWI LISDPTSAVL IAITIPLIPM
FAILIGKFTE QKVAAVATTT EKLSARLHEL VRALPVLTAF GRAQAQAEAV RRTGDAHRRA
TMGTLRVAFL SALVLEIAAS LSVALIAVGI GVRLVYGDMS LATGLIVLIL APDCYLPLRN
AGAAHHASED GLEAVRRVAE VVDSPRAEVT VPEAGETGVE VRDLRVERRG GFAPDGLSFT
VRPGQVHHLD APSGRGKSTT IAALLGFLAP TSGEVRVRGS VAWVPQRPAF AARTVAEELE
LTTGRVDHEV LRRVAAEHLV DRPVAELSTG ERQRVAVARA LSTGADVLLL DEPTAHLDPA
TAAKVMAAIT AAAEGGAAVV LATHRLAEAA DTDDDTTAVR AADREPTTPR TPRPTRLLLG
GAAIGTAALL SGVALTALSA YLIAKASTQP PILTLSVITV GVRACALAKG VLRYLERLVT
HDAAFRFADA LRIDMWRNLR PGRAELTRLV DDTDTVRDLV PRVLQPPLAA AGVGLAAVVL
LTAIQPVAGL ALAVLLLVGG LAAPLLAAAL DRRATTALAR GRRRVSEDVL TLLTAAPDLI
AFRAEGRYRA GLAAVDAELA RQTRRQAFGA GAATGLITLA TGLAAVVCTA LAGDVNPLLV
PVLGLVPLAL VETLSTLPAA AQHRAALREA YGRVTERHPE VRPGTGPAKL ENVDVRWPGA
AEPVLRDFTL TPGVGERIAV VGPSGAGKST LFALLLGFLE PERGRVSRPE RVAWCPQEPM
LVSTTLRENL KLGDAHADDD RLREALVTAG LPEWVDRLDT MIGPTLLSGG EAQRVALARA
LLHDADLVLL DEPTAHLDRP TAEALLDRLD VALKGKTVVH ITHRPEETRH ADLVLSMRPA
R