Gene Amir_0067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0067 
Symbol 
ID8324213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp76254 
End bp77081 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content71% 
IMG OID644940606 
Producttwo component transcriptional regulator, LytTR family 
Protein accessionYP_003097887 
Protein GI256374227 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3279] Response regulator of the LytR/AlgR family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTCCG GCCTCCTCGT CCTGGCGGTG GACGACGAGG CGCCAGGTCT GGACGAGATC 
AAGTTCCTGC TGGAGAGCAG CCCGCACATC CGCCGCGTGC TGACCGCGTT CGACGCGGCG
GAGGCGCTGC GCATCCTCAG GGGCGACTAC GACACCGAGG TGATGGAGCG CCAGGAGGCG
GGCCAGCCCC CGGTGGACGC GGTGTTCGCC GACATCAACA TGCCCGGTCT GAGCGGCACC
GACCTGGCCC GCGTGCTCGG CGCCTTCCGC GCGCCGCCCG CGCTGGTGTT CGTCACCGGC
GTCGAGCACT CCGAGGCCGT GGTGGCGTTC GACGTCGGCG CGGTCGACTT CGTGACCAAG
CCGATCAACA GCGACCGGGT CAACAAGGCC ATCGCGCGCG TGGTCGACCG GGTCAACTCG
GTGTCGGCCG CCGCCGCCGC GCCGGAGCCG ACCGCCGCCG ACTCCCAGGA CGACGAGGTC
ATCCCGGTCG AGCTCGGTGG AACGATCAAG CTCGTGCCGA GGGCCAGCGT CCGCTACGTG
GAGGCCCAGG GCGACTACGC TCGGCTGCAC ACCAACGACG GCCAGAGCCA CCTCGTGCGC
ATCCCGCTGG CCCAGCTGGA GGAGCGCTGG GAGAACGCGG GGTTCGTGCG CATCCACCGC
TCCTTCCTGG TCGCGCTGCC GCTGGTGACC GAGCTGCGGA TGACGTCCAA CGGCTACGCG
GTGGTCATCG GCAGCGGCGA GGGGGCGAAG GAGCTGCCGG TGAGCCGCAG GCACACCAGG
GACCTGAAGG AGCGGATCGT GCGCCCGCCG AAGAGCAACT GGGGATGA
 
Protein sequence
MSSGLLVLAV DDEAPGLDEI KFLLESSPHI RRVLTAFDAA EALRILRGDY DTEVMERQEA 
GQPPVDAVFA DINMPGLSGT DLARVLGAFR APPALVFVTG VEHSEAVVAF DVGAVDFVTK
PINSDRVNKA IARVVDRVNS VSAAAAAPEP TAADSQDDEV IPVELGGTIK LVPRASVRYV
EAQGDYARLH TNDGQSHLVR IPLAQLEERW ENAGFVRIHR SFLVALPLVT ELRMTSNGYA
VVIGSGEGAK ELPVSRRHTR DLKERIVRPP KSNWG