Gene Amir_0047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0047 
Symbol 
ID8324192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp51262 
End bp52014 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content75% 
IMG OID644940585 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003097867 
Protein GI256374207 
COG category[R] General function prediction only
[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGATCT CGGGCACCGC GGCGATCGTC ACCGGCGGAG CGTCGGGGCT GGGCGCCGCC 
ACCGCGCGCG CGCTCGCCGC GCGGGGGGCG CGCGTGTTCG CGCTGGACAT CTCGGTGGAC
GGCGCCCCCG CCGTGGAGGG CGTCACCTAC CTGGCGGCGG ACGTCACCTC GGAGGAGGAC
GTCCAAGCGG CCGTCGACAC CGCCGCGGGC TCCGGCGCTC CGCTGCGGAT CGCGGTGAAC
TGCGCGGGCA TCGGCCCGTC GACCAGGACG GTCGGCAAGG CCGGTCCGCA CCCGCTCGAC
CTGTACCGCA AGGTCCTGGA CGTGAACGTG GTCGGCACGT TCAACGTCCT GCGCCTGGCC
GCCGCCGCGA TGGGCGCGAC CGAGCCGGGG CCGGACGGCG CGCGCGGCGT CGTGGTCAAC
ACCGCCTCCG TCGCCGCCTA CGAGGGCCAG ATCGGCCAGG TCGCCTACGC GTCCTCGAAG
GCCGCGGTGG TCGGCATGAC GCTGCCCGCC GCGCGCGACC TGTCCTCGGT CGGCGTCCGG
GTCATGACCA TCGCGCCCGG CATCGTCGAC ACCCCGATGC TGGCGACCGT GTCCGAGGAG
TTCCGCGCGG GCCTGGCCGC CGGGGTGCCG TTCCCCAAGC GGCTGGCCCT GCCGGACGAG
TACGCGAGGC TGGCGCTGTC GATCATCGAG CACGACTACC TGAACGGCGA GGTCGTCCGG
ATGGACGGCG CGCTGCGCAT GGCGCCCAGG TAG
 
Protein sequence
MEISGTAAIV TGGASGLGAA TARALAARGA RVFALDISVD GAPAVEGVTY LAADVTSEED 
VQAAVDTAAG SGAPLRIAVN CAGIGPSTRT VGKAGPHPLD LYRKVLDVNV VGTFNVLRLA
AAAMGATEPG PDGARGVVVN TASVAAYEGQ IGQVAYASSK AAVVGMTLPA ARDLSSVGVR
VMTIAPGIVD TPMLATVSEE FRAGLAAGVP FPKRLALPDE YARLALSIIE HDYLNGEVVR
MDGALRMAPR