Gene Amir_0044 details

Gene Information

• Locus tag: Amir_0044
• ID: 8324189
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 47159
• End bp: 48991
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644940582
• Product: choline/carnitine/betaine transporter
• Protein accession: YP_003097864
• Protein GI: 256374204
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACGACCG CAGAACCGCA GATCAAGACA CCTCTGCCGG GGGAGCCGAA GGTCGACCGC 
CCCGGCCGCA CCGACTACGT CGTGTTCGGC GTGGCCGCCG CTATCACCGT CGCCTTCCTC 
GGATGGGGCG TGTTCGCCAC CGATTCGCTC GCCTCTGCTT CCAAGACTGC CCTCGGGTGG 
GTCATGGGAA ACCTGGGTTG GGCGTTCGTG CTGCTCGCGT CCGGCTTCGT CCTGTTCGCC 
CTCTGGCTCG CCGTCAGCCG CTACGGCCGC ATCCCGCTCG GCCGCGACGA CGAGCGTCCC 
GAGTTCACGA CCGTGTCCTG GATCGCGATG ATGTTCAGCG CGGGCATGGG CATCGGCCTG 
ATGTTCTACG GCGTCAACGA GCCGCTGACG CACTTCGTCA ACCCGCCGCC GGGCACCGTG 
GAGGCCGGGT CCGACGCGGC GCTGCGCACC GCGATGGCCA CCACCCTGTT CCACTGGACC 
CTCCACCCGT GGGCGATCTA CGCCGTGGTG GGCCTGGCCA TCGCCTACAG CAGCTTCCGC 
AGGGGCCGCA GCCAGCTGAT CAGCGCCGCG TTCGCGCCGC TGCTCGGCGA GCGCACCGCG 
AACGGCGGCG TCGGCAAGGC CATCGACGTG CTGGCGATCT TCGCCACGCT GTTCGGCTCG 
GCCGCCTCGC TCGGCCTCGG CGCGCTGCAG ATCGGCAGCG GCCTGGAGAT CGTCGGGTGG 
GCCGGTGAGG TCGGCAACGC CGTCCTGGTC GGCGTCATCG CCGTGCTGAC CGTGGCGTTC 
ATCGCCTCCG CGGTCTCCGG CGTCGCCAAG GGCATCCAGT GGCTGTCCAA CGTCAACATG 
GTGCTGGCCG TCGTGCTGGC GCTGTTCCTG TTCGTGGTCG GCCCGACCGT GTTCATCCTG 
AACATGGTGC CCACCGCGAT CGGCGAGTAC TTCCGCGAGC TGGCCGAGAT GACCGGCCGC 
ACCGCCGCCA CCGGCGGCGA CCCCATGGAG ACCTGGCTGT CCGGCTGGAC CGTCTTCTAC 
TGGGCCTGGT GGATCGCCTG GGCGCCGTTC GTCGGCATGT TCATCGCCCG GATCAGCCGG 
GGCCGCACCA TCCGCCAGTT CGTCGCGGGC GTCATCGGCG TGCCGAGCCT GGTCAGCCTG 
ATGTGGTTCG CCATCTTCGG CGGCACCGCC ATCGCCACCC AGCGCGGCGG CGCGGACATC 
GCGGGCCAGT CCACCGCCGA GGGCCAGCTG TTCGCCGTGC TCCGCGAGTA CCCGGTCGCG 
TCGGTCTCGA TCGTGCTGGT CATGGTGCTG GTGGCGATCT TCTTCGTGTC CGGGGCCGAC 
GCCGCGTCGG TGGTCATGGG CACCCTGTCC CAGCGCGGCT CCATCGCCCC GACCAGGGGC 
GTGGTGATCT TCTGGGGCGT CGTGACCGGC GCCGTCGGCG CGGTGATGCT GCTGGTCGGC 
GGGTCGAGCG GGCTCACCGG CCTGCAGAAC CTCACGATCA TCGCGGCGCT GCCGTTCGCC 
GTGGTCATGG TCGGCCTGTG CCTGTCGCTC GCCCGCGACC TGCGCAGCGA CCCGATGATC 
CGGCGCGAGG AGCGGGTCGC CGAGGTGCTG GAGGAGGTCT CCACCAAGAT CGGTCCGGAG 
GAGGCGGCGC TGCGCGCGGT CGAGAGCCTG ACCAAGGGCG AGGGGCTGAG CAGGGCGGAG 
AAGCGCGTCC GGTCCGAGGC GGCGGGGAAG GCCGCCGAGG CCGAGGGCGA CGAGCCCGCC 
GCCACCGGGG GCGTCACGGC CGAGGGCTCC ACCGCGCAGG ACGTCACCGC GCAGGACACC 
ACCGCCGAGG GCGGGAGCCT GACCAAGAAG TGA 

 

Protein sequence

MTTAEPQIKT PLPGEPKVDR PGRTDYVVFG VAAAITVAFL GWGVFATDSL ASASKTALGW 
VMGNLGWAFV LLASGFVLFA LWLAVSRYGR IPLGRDDERP EFTTVSWIAM MFSAGMGIGL 
MFYGVNEPLT HFVNPPPGTV EAGSDAALRT AMATTLFHWT LHPWAIYAVV GLAIAYSSFR 
RGRSQLISAA FAPLLGERTA NGGVGKAIDV LAIFATLFGS AASLGLGALQ IGSGLEIVGW 
AGEVGNAVLV GVIAVLTVAF IASAVSGVAK GIQWLSNVNM VLAVVLALFL FVVGPTVFIL 
NMVPTAIGEY FRELAEMTGR TAATGGDPME TWLSGWTVFY WAWWIAWAPF VGMFIARISR 
GRTIRQFVAG VIGVPSLVSL MWFAIFGGTA IATQRGGADI AGQSTAEGQL FAVLREYPVA 
SVSIVLVMVL VAIFFVSGAD AASVVMGTLS QRGSIAPTRG VVIFWGVVTG AVGAVMLLVG 
GSSGLTGLQN LTIIAALPFA VVMVGLCLSL ARDLRSDPMI RREERVAEVL EEVSTKIGPE 
EAALRAVESL TKGEGLSRAE KRVRSEAAGK AAEAEGDEPA ATGGVTAEGS TAQDVTAQDT 
TAEGGSLTKK