| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0017 |
|---|
| Symbol | |
|---|
| ID | 8324161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 17775 |
|---|
| End bp | 18836 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644940554 |
|---|
| Product | sortase family protein |
|---|
| Protein accession | YP_003097837 |
|---|
| Protein GI | 256374177 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCGGC CGGTCGGCGA CGCGCCCACG CAGTACGCGC AGCCCGTCGG GCGCAGCCTG
CCCCCGCCGC CGGGACGGCC CGTCGCGCCG CCGCGCCACC GCGCGCCGCG CAGGCCCGTC
GAGCCTCCCA CGGAGGTCAT CCCCAGGTTC GAGGACGACC GGGACGACTA CGAGGACCCG
CAGGACGACC TCGACCGGGA CGACCTCGAC CGGGACGACC TCGACCGGGA CGAGCGCGCC
GGGGCGGACC GGCACGAGCC GGAGTACCCG CCCGAGGGCC CGCTGCGCAA GGTCGTGCGG
GGCACCGGCG AGGCGCTGAT CACGCTCGGC CTCGTCGTGC TGCTGTTCGT GGTCTACGAG
GTCTACGTCA CCGACCTGAT CTCCGCGGGC AAGCAGGACG ACGTCACCTC GGCGCTGGAC
GAGGAGTGGA AGGACTCGAA CACCGTCGCG GCCGACCCGC AGCGCGAGGT CAAGTACGAC
CTGCTCGACG GCAAGGCGTT CGCGAAGATC TACATCCCGG TGTTCGGGGC GGACTACAAG
TTCTCCATCG TCGAGGGCAC CACCGACAAG GACCTGGAGA CCGGCCCCGG CCACTACAAG
GGCACCGCCC TGCCGGGGGA GAAGGGCAAC TTCGCGGTCG CGGGCCACCG GGTCGGCAAG
GGCTCGCCGT TCAACGACCT CGACCTGCTC AGCTCGTGCG ACGCGATCGT GGTGGAGACC
CAGGCGTCCT GGTTCGTCTA CCGGATGCTG CCGAAGAACA GCGAGGTCGC GGGGTGGGCC
TCCCGCGCGT CCGACCCCAG GTGCAAGGAC GTCGCGCCGC TCAGCGGGCC GTACTCCAAG
ACCCAGGGCC AGGAGATCGT GCTGCCCTCG GCGGGCGAGG TCATCAACGA GGTCCCGTAC
AACGAGGCCC AGGTCCCCGA GGACCAGCTG AAGTCGCTGA TGACGCTGAC CACGTGCCAC
CCGCGCTTCT CGGACAAGCA GCGGCTGATC GTGCACGCGA CGCTGGCCCA GCACTACCCG
AAGTCGGACG GCTTCCTGCC CCCCGAGCTC AAGGAGCAGT GA
|
|---|
| Protein sequence | MLRPVGDAPT QYAQPVGRSL PPPPGRPVAP PRHRAPRRPV EPPTEVIPRF EDDRDDYEDP
QDDLDRDDLD RDDLDRDERA GADRHEPEYP PEGPLRKVVR GTGEALITLG LVVLLFVVYE
VYVTDLISAG KQDDVTSALD EEWKDSNTVA ADPQREVKYD LLDGKAFAKI YIPVFGADYK
FSIVEGTTDK DLETGPGHYK GTALPGEKGN FAVAGHRVGK GSPFNDLDLL SSCDAIVVET
QASWFVYRML PKNSEVAGWA SRASDPRCKD VAPLSGPYSK TQGQEIVLPS AGEVINEVPY
NEAQVPEDQL KSLMTLTTCH PRFSDKQRLI VHATLAQHYP KSDGFLPPEL KEQ
|
|---|
| |