Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_4189 |
Symbol | |
ID | 8255324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 5068478 |
End bp | 5069173 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644937854 |
Product | LytTr DNA-binding region |
Protein accession | YP_003094442 |
Protein GI | 255534070 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3279] Response regulator of the LytR/AlgR family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.537023 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTGCT TAATTGTAGA TGACAATATT ATAGCGCTCG CTGTGCTCAA AAAGCTGATC AGTATGGAAC CTACACTGAC AGTGGTGGGG GAATGTTTTG ATGCTGTTGA AGCTTACAAA CAAATTCAGA CAAAGGAAGT AGATATCTTA TTTCTAGATA TAGAAATGCC GGATATGAGC GGCATAGAAC TGGTGAAAAG TTTAGGCGAT AAACGGCCAA TGGTTATCTT TACTACTTCT ACAATAGGGT ATGCCGCTGA GGCCTTTGAC CTAAATGTGG TTGATTTTCT GATCAAGCCC GTTAGCCCTG CGCGGTTTCT GCAGGCGGTA GAAAAGGCAA AGCGGGTGTT GCTTACCAAA GGTTTGTCTG TTGCGGATAA AGAAGATGAG TTTGTGTTTA TACGTGATTC CAATGTGGTG CGCAGAGTTA AGGTGAGCGA TATTTTATAT ATGGAGGCCC GGGGTGATTA TGTCAGAATC AACTTGACCG ATCATACCTA TTCCATCCAC TCTTCTTTAA AATCGGTAGA AGAAAAATTA TCTAAAAATA TGTTTCTGAG GGTACACCGC TCATTTATCA TCAATGTCGG AAAAATAGAT ACCATTGAGG GCGGAACACT GATCGTGCAC CGCAATATGG TTCCTGTATC GGATGCTTAT CGGGCAACTT TATATAAGAG AATGCAAATC CTGTAA
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Protein sequence | MNCLIVDDNI IALAVLKKLI SMEPTLTVVG ECFDAVEAYK QIQTKEVDIL FLDIEMPDMS GIELVKSLGD KRPMVIFTTS TIGYAAEAFD LNVVDFLIKP VSPARFLQAV EKAKRVLLTK GLSVADKEDE FVFIRDSNVV RRVKVSDILY MEARGDYVRI NLTDHTYSIH SSLKSVEEKL SKNMFLRVHR SFIINVGKID TIEGGTLIVH RNMVPVSDAY RATLYKRMQI L
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