| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4188 |
|---|
| Symbol | |
|---|
| ID | 8255323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 5067687 |
|---|
| End bp | 5068418 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644937853 |
|---|
| Product | MIP family channel protein |
|---|
| Protein accession | YP_003094441 |
|---|
| Protein GI | 255534069 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
|---|
| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.394775 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACCTT TTTCAGCCGA AGTGCTCGGC ACGATGTTTA TGATCTTATT GGGCAACGGG
GTGGTTGCCA ACGTGGTTTT GAAAGGAACC AAAGGCAACA ATGGTGGATG GATTGTGATT
ACCACCGCCT GGGCCCTGGC TGTATTTGTA GGCGTGGTTA TCGCCGGACC CTATAGTGGC
GCCCATCTTA ATCCAGCCGT AACCATTGGA CTGGCCATTG CCGGAAAATT TCCCTGGGCC
AATGCACCAA TGTATATTGC GGCTCAATTT ATAGGCGCTA TGTCGGGGGC TTTCCTCGTT
TGGCTATTGT TTAAAGATTT TTATGCCGGC ACTGAAGATA AAGGGGCAAA ACAGGCTACC
TTTTGTACCG GCCCCGCCAT TCCAAATACG GTATCTAACC TGATCAGCGA GATCATTGGC
ACTTTTGTAC TCATATTTGT CATCTTTCAT TTTACAAATG CCGAAATGGG TACAGATAAA
AGCCCGATTG GACTGGGCTC CATTGGCGCA TTGCCGGTAA CCTTACTGGT TTGGGTAATC
GGTCTTTCGC TGGGCGGTAC CACCGGCTAT GCTATTAATC CGGCAAGAGA TCTGGGACCA
AGAATTATGC ATGCCCTATT GCCAGTAGCG GGTAAAGGTG GTAATAACTG GAATTACGCC
TGGATACCGG TAATTGGCCC CGTAATAGGT TGTGCGCTGG CTGCTATGCT TTATTTATGG
ATTAAAATTT AA
|
|---|
| Protein sequence | MSPFSAEVLG TMFMILLGNG VVANVVLKGT KGNNGGWIVI TTAWALAVFV GVVIAGPYSG
AHLNPAVTIG LAIAGKFPWA NAPMYIAAQF IGAMSGAFLV WLLFKDFYAG TEDKGAKQAT
FCTGPAIPNT VSNLISEIIG TFVLIFVIFH FTNAEMGTDK SPIGLGSIGA LPVTLLVWVI
GLSLGGTTGY AINPARDLGP RIMHALLPVA GKGGNNWNYA WIPVIGPVIG CALAAMLYLW
IKI
|
|---|
| |