Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_4157 |
Symbol | |
ID | 8255292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 5029088 |
End bp | 5029831 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644937822 |
Product | Shikimate dehydrogenase substrate binding domain protein |
Protein accession | YP_003094410 |
Protein GI | 255534038 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0000985519 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGAAAAT TTGGTTTAAT CGGCTACCCT TTATCACATT CCTTTTCAAA AAAGTTTTTT ACAGAAAAAT TCGAACATGA ACAGATTGAG GGTTGTGCAT ACGAGCTTTA CCCTATAGCT GACATCGGGC TTTTTCCTAA AATGATCTCA GGGGATCGGG AACTTTGTGG AATAAATGTA ACTATACCCT ATAAGGTACA GGTATTGCCA TATTTGAATG AGATGGATGA GGCTTCCACA GAAATCGGAG CTGTTAACTG TATTTCGATC ATACGAAATG AATCGGGGCA ATGGCTTAAA GGATACAATA CGGATGCTTA TGGATTTGAA GAATCATTAA AACCTTTATT GGAAGTACAC CACCGTAAAG CGTTGGTATT TGGAGATGGC GGGGCGGCAA AGGCTATAAA ATATGTTTTA AACAAACTTG GGATTTCTTT CCTGGTAGTG ACCAGGAAAC CATCAGCAAG CAGCATTTTA TACAATGAAG TGGATGAGGC TATGCTTCGG GAATATACCG TTCTGATTAA TACCACTCCT TTGGGGATGT CTCCCGATAC AGATACTTAT CCGGACATTC CTTATGGTGC TTTAAATAAA AACCATGTGG CTTACGATCT GGTCTATAAT CCTGAAGAGA CCCTGTTTTT AAAACAGGTG AAAGAAAAGG GAGGCAAAAC AAAAAACGGA TTAGAGATGT TGCACCTGCA GGCCATCCGC TCCTGGGAGA TTTGGAATCC ATAA
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Protein sequence | MRKFGLIGYP LSHSFSKKFF TEKFEHEQIE GCAYELYPIA DIGLFPKMIS GDRELCGINV TIPYKVQVLP YLNEMDEAST EIGAVNCISI IRNESGQWLK GYNTDAYGFE ESLKPLLEVH HRKALVFGDG GAAKAIKYVL NKLGISFLVV TRKPSASSIL YNEVDEAMLR EYTVLINTTP LGMSPDTDTY PDIPYGALNK NHVAYDLVYN PEETLFLKQV KEKGGKTKNG LEMLHLQAIR SWEIWNP
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