Gene Phep_4157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_4157 
Symbol 
ID8255292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp5029088 
End bp5029831 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content40% 
IMG OID644937822 
ProductShikimate dehydrogenase substrate binding domain protein 
Protein accessionYP_003094410 
Protein GI255534038 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000985519 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGAAAAT TTGGTTTAAT CGGCTACCCT TTATCACATT CCTTTTCAAA AAAGTTTTTT 
ACAGAAAAAT TCGAACATGA ACAGATTGAG GGTTGTGCAT ACGAGCTTTA CCCTATAGCT
GACATCGGGC TTTTTCCTAA AATGATCTCA GGGGATCGGG AACTTTGTGG AATAAATGTA
ACTATACCCT ATAAGGTACA GGTATTGCCA TATTTGAATG AGATGGATGA GGCTTCCACA
GAAATCGGAG CTGTTAACTG TATTTCGATC ATACGAAATG AATCGGGGCA ATGGCTTAAA
GGATACAATA CGGATGCTTA TGGATTTGAA GAATCATTAA AACCTTTATT GGAAGTACAC
CACCGTAAAG CGTTGGTATT TGGAGATGGC GGGGCGGCAA AGGCTATAAA ATATGTTTTA
AACAAACTTG GGATTTCTTT CCTGGTAGTG ACCAGGAAAC CATCAGCAAG CAGCATTTTA
TACAATGAAG TGGATGAGGC TATGCTTCGG GAATATACCG TTCTGATTAA TACCACTCCT
TTGGGGATGT CTCCCGATAC AGATACTTAT CCGGACATTC CTTATGGTGC TTTAAATAAA
AACCATGTGG CTTACGATCT GGTCTATAAT CCTGAAGAGA CCCTGTTTTT AAAACAGGTG
AAAGAAAAGG GAGGCAAAAC AAAAAACGGA TTAGAGATGT TGCACCTGCA GGCCATCCGC
TCCTGGGAGA TTTGGAATCC ATAA
 
Protein sequence
MRKFGLIGYP LSHSFSKKFF TEKFEHEQIE GCAYELYPIA DIGLFPKMIS GDRELCGINV 
TIPYKVQVLP YLNEMDEAST EIGAVNCISI IRNESGQWLK GYNTDAYGFE ESLKPLLEVH
HRKALVFGDG GAAKAIKYVL NKLGISFLVV TRKPSASSIL YNEVDEAMLR EYTVLINTTP
LGMSPDTDTY PDIPYGALNK NHVAYDLVYN PEETLFLKQV KEKGGKTKNG LEMLHLQAIR
SWEIWNP