Gene Phep_3986 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3986 
Symbol 
ID8255120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4809986 
End bp4810855 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content38% 
IMG OID644937650 
Producthelix-turn-helix- domain containing protein AraC type 
Protein accessionYP_003094239 
Protein GI255533867 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.542106 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATTC AGCGAGAAAT TACCCCTTTG ACGCAAAGTG ATTGCTTTAC CTTATTTTCA 
AGACGTAAAA AGCAATTTGA CTTCCCTCTG CACTATCATG AAGAGTACGA GCTTAACCTG
ATTCTCAATG CAAAAAATGC AAAAAGGATT GTCGGCAACC ATATTCACCT CATAGATGAC
CTAGAACTTG TATTTGTAGG CCCCAATCTC AGTCATGCGT GGTTTACACA TGAATGTAAA
TCTTCGGAGA TTATTGAAGT CACCATTCAG TTTCACAAGG ATTTTCTGGA CGAAACGATC
TTGAGAAGAA ATCAGTTGAG CTTTATCCGA AACCTCTTCG AAAGATCAAA AAAAGGCATT
GCCTTTTCTA CTGAGACCAT TAAAGCCATT AAACCGAGAA TACTCGATCT ATGCCAGAAA
AACGGCTTCG ATTCGGTTCT CGAACTGCTA TCGATTCTGC ACGATTTGTC CATTTCCAGA
AATATGGTGA CTCTATCTGA TGCGGCTTTT ATCAACCAGC ATTCCAGTTA CAATAGTAGA
AGGATCGAAA AGGTATTTGA ATACCTAAAT GCCAACTACA GTAAGCAGAT TACTTTAGCT
GATGTAGCCA AAATCACCAA CATGCCTGAT GTATCATTTA GCCGCTTTAT CAAAAAGAGA
ACCGGAAAGA CATTTATCGA TAGCCTGAAT GAAATCAGGT TAGGCCATGC CAGCAGATTA
CTTATAGATA CCACCACTAC AATATCGGAA ATAGCCTATA GCTGTGGCTT CAATAATATA
TCCAACTTCA ACCGCATTTT TAAAAGGAAA AAGAATACAA CTCCAAAGCA GTTCAGAGAT
AATTATTCCG GAACCAGGGT TTTTATTTAA
 
Protein sequence
MNIQREITPL TQSDCFTLFS RRKKQFDFPL HYHEEYELNL ILNAKNAKRI VGNHIHLIDD 
LELVFVGPNL SHAWFTHECK SSEIIEVTIQ FHKDFLDETI LRRNQLSFIR NLFERSKKGI
AFSTETIKAI KPRILDLCQK NGFDSVLELL SILHDLSISR NMVTLSDAAF INQHSSYNSR
RIEKVFEYLN ANYSKQITLA DVAKITNMPD VSFSRFIKKR TGKTFIDSLN EIRLGHASRL
LIDTTTTISE IAYSCGFNNI SNFNRIFKRK KNTTPKQFRD NYSGTRVFI