| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3858 |
|---|
| Symbol | |
|---|
| ID | 8254992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4627531 |
|---|
| End bp | 4629924 |
|---|
| Gene Length | 2394 bp |
|---|
| Protein Length | 797 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644937522 |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_003094111 |
|---|
| Protein GI | 255533739 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACAG CACAGCAGGA TTCATCAACT CATGAAAGTA AACGCATCAA TGCGTTGCAT
GGCTATAGTA TATTGAATAA ACCACAAGAG GACCAGTTTG ACCATATGGC TAAACTGGCC
TCGTTTTTAT GTGGCACACC CATAGCAATC ATTGCGTTGG TTGACGAAGA CCTGCTTTGG
TTCAAATCTA CCATAGGTAT CACCTATAAT GAAATGCCCC AGGGCATTTC ATTTTGTGAA
CATACTCTTA CGGGCGAGCA GACTTTTGAA GTATATGATG CCAGGTCTGA TGAAAGATTT
AAAGCGCATC CATCAGTTGT CGGCAAACCT CATATAAGGT TTTATGCAGG TACGGCTCTT
ATAGATGAGG ATGGCTCTAA GTTGGGTGCG CTCTGTGTAT TTGATACAGC ACCCCGAAAA
CTAAGCGATG CGCAAAAAGA GGGCCTGGAA ATTCTGGCCA GAACAGTTGT TGCCCATATT
TCCTTAAAAA AGAAAAGTGA AGCATTGATT GCGAATAACC ACCGCTATGA GGAACTGCTC
AACATCACTG CAGTTTCACC CGAAATACAT TGTATCCTGG ATTATACCGG TAAAGTGTTG
TTCATTAACA ATGCTATAAC GAATATTCTT GAATATACAG TTGAGGAAGC TATTGGCTTA
AATATCTGGA ATTTTTGCCA TAGGGAAGAT ATAGACCGTA TTGTAAAAAT CATAGAAGAG
GGGCTGAGGA ATAAGATCAA GGAGTTTGTA ATTGATTTCA GGATTGTCAG TAAAACAGGG
GTAATCCGCT GGCTGGGCTG GAGCATGGTA GCCAAAAACG GACGCTGGTA TGCTTACGGA
AGAGACATTA CAGAAAATAA GAAGGTAGAG CACGAATTGA TGAAGCTGTC TTTTGTGGCC
AGTAAGGTGA ACAATGCCAT CGTCATTAAT GATGCCAACA ACCATGTAAC CTGGGTAAAT
GAAGCTTTTG AAAAGATTAC GGGTTTTAAC CTGGATGATC TTAAGGGCAG GCGATTGGGC
GATCTTATTG CTGGTCCGGA AACAGATATG GCACTTATGG AAAGGGCAAG GGCACAGACC
AAACTGAACC AGTCCTTCAC GGTCGACCTC CTGGCTTACC GTAAAGATGG TCAACCCATC
TGGCTTTCCA TATACAATAC GGTAGTATTT AATGATCTGG GAAATGTGGA GATAGAAGTA
GAAATCATCA TTGACATTAC CGACAAAAAG AGAGTGGAAC GTGAAATGCT GGAGGCCAAA
GAACAGGCCC TGCAATTGAG CGAAGCCAAA GAGATGTTCC TCTCTGTAAT GAGCCATGAG
ATCAGAACGC CACTCAATGC TGTAATTGGC ATGACTCATC TGCTGATAGA AAATGATCCG
AGGGCCTCTC AGATCGAAGA CCTCAATATC CTTAAGTTTT CGGGTGAAAA CCTGCTGAAC
ATCATTAATG ATATCCTGGA TTTCACTAAA ATGGAAACCG GTAACCTTCA ACTTGAGGCA
CTTCCATTTA GCATGAAGGC GCTCACCACT GATATCATCA CCTCTTTATA TGTTGGTGCA
ACTAAAAAGG GGAATATTCT GGAGCTCTTG TACGATGACC AGATCCCGCA TCTTTCGGGA
GATAAAACAA GGTTATACCA GATACTGATG AATTTACTCG GTAATGCGAT TAAATTCACT
GATCAGGGAA AGATCATACT GAGTGTTAAA CTGCTTGAGC AGGATGCTGT AAATGCCAGC
CTGTATTTTG AGATCAGTGA TACAGGAATT GGCATACCTG AGGATAAACT TTCTTATATT
TTTGAGACCT TTACGCAGGC TAAAACGGAT ATTTCAAGGA AATATGGTGG AACAGGTCTG
GGCCTGGCCA TTACTAAAAA ACTGCTGGAA CTATACAATT CGGAAATTCA AGTAAAAAGC
AGGGAAGGAG CGGGTACTAC TTTTTCGTTT ACGCTCAGAT TTGCAAAGGC ATCTGCCGCT
GTGAGCGAAG TTAAGCCTGC GCTGCAACCA CTTGCACTAT CAGGTAAAAA AATACTGATC
GTAGATGACA ATGAGATTAA CCTGCTGATC GCTAAAAGAA TCCTGACAAA ATATAGTTTG
GAGATAGACT TTGCACTTAG CGGTGAAGAA GCCCTTGAAA TGGTACAAAA GAATATTTAT
GACCTGGTAT TTATGGATAT TAAAATGCCA GGCATAGATG GTTTTGAAAC TACGGTGCGT
ATCAGAAATC TTGGTGGCAA TTATTTTAGC ACGGTGCCTA TCATCGCTTT AACGGCATCC
ACATTAAACA ATGAAATTGT GAGGTTTAAG CAGTCGGGAA TGAATGGCCA TATTTTAAAA
CCATTTAAAC TTGAAGAGAT CAGAGATTTG CTATCAGCCT ATTTACAGCC CTGA
|
|---|
| Protein sequence | MSTAQQDSST HESKRINALH GYSILNKPQE DQFDHMAKLA SFLCGTPIAI IALVDEDLLW
FKSTIGITYN EMPQGISFCE HTLTGEQTFE VYDARSDERF KAHPSVVGKP HIRFYAGTAL
IDEDGSKLGA LCVFDTAPRK LSDAQKEGLE ILARTVVAHI SLKKKSEALI ANNHRYEELL
NITAVSPEIH CILDYTGKVL FINNAITNIL EYTVEEAIGL NIWNFCHRED IDRIVKIIEE
GLRNKIKEFV IDFRIVSKTG VIRWLGWSMV AKNGRWYAYG RDITENKKVE HELMKLSFVA
SKVNNAIVIN DANNHVTWVN EAFEKITGFN LDDLKGRRLG DLIAGPETDM ALMERARAQT
KLNQSFTVDL LAYRKDGQPI WLSIYNTVVF NDLGNVEIEV EIIIDITDKK RVEREMLEAK
EQALQLSEAK EMFLSVMSHE IRTPLNAVIG MTHLLIENDP RASQIEDLNI LKFSGENLLN
IINDILDFTK METGNLQLEA LPFSMKALTT DIITSLYVGA TKKGNILELL YDDQIPHLSG
DKTRLYQILM NLLGNAIKFT DQGKIILSVK LLEQDAVNAS LYFEISDTGI GIPEDKLSYI
FETFTQAKTD ISRKYGGTGL GLAITKKLLE LYNSEIQVKS REGAGTTFSF TLRFAKASAA
VSEVKPALQP LALSGKKILI VDDNEINLLI AKRILTKYSL EIDFALSGEE ALEMVQKNIY
DLVFMDIKMP GIDGFETTVR IRNLGGNYFS TVPIIALTAS TLNNEIVRFK QSGMNGHILK
PFKLEEIRDL LSAYLQP
|
|---|
| |