Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3834 |
Symbol | |
ID | 8254968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4605508 |
End bp | 4606725 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644937498 |
Product | Lytic transglycosylase catalytic |
Protein accession | YP_003094087 |
Protein GI | 255533715 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTAA TAGTACGCTT TGTATCTTAT TGTATTTTGG CTTTCACCTG CTTTACGGCA GCTGCACAGC AACGTATGCT GCAGATTACA GATACAACCT ATGTGCCTGT TGTTGAAGAA GCAACAACTT TTTATAACCA CAATTACATG TATAAGGCCA GGTTGGATTC TATTCAGAAA ATAGTTCCGC TAAGCTACAA TGAATATGTA CAGAAGTACA TTGATATTTA TGCAGGCCGT AAAGATATGA TGGGCAAAAT GCTTGGGCTT TCGGGCTATT ATTTCCCAAT CTTTGAAAAG GCTTTAAAAA GCTATAACAT TCCGGAAGAG ATCAAATACC TGCCAATCAT TGAATCCTCG ATGAACCCAC ACGCAGTTTC GAGGGTTGGG GCAACCGGCT TATGGCAGTT TATGTTTGCT ACAGCTAAGG GGTATGGACT GAATATGGAT AACTTTGTGG ATGAACGTAA AGACCCTATA CAGGCCAGCT ATGCAGCTGC GGCATATTTC AGAGATGCTT ATGAAGAACT GGGCGACTGG TTGCTGGCAA TTGCAGCCTA CAACTGCGGA ATGGGAAATG TAAACCGTGC AATTGCAAAG GCAGATTCCA GGGATTTCTG GGAGATCAGA CGCTTTTTGC CTATGGAGAC AAGAAATTAT GTGCCGGCCT TTATTGCGGC TGTGTATGTG ATGAACTATT CAGGAAAACA TGAAATTAAG GCGCAACGTA CGGTTTTTCT TAAAAATACA GACACCATCC AGGTGAACCG TTTTGTTTCT CTCCCTTCAT TGGCAGAGGC CCTGAATATA GAAGTAGAAG AGTTGTGGAG TCTGAATCCC TCTTATAAGA AGAAGATTGT AAACGGTTCT GAGCTTTCGC CAAAACGGGT GATTTTACCG AAGGTGAGCC TGGCCAGTTT TACCAGGGTA TACGAATTGC TGAACGAGAC AGAAGCCGAT GTGGATAAAC ACATTATACT GGCGTCAAAT GACAACCAGT TGAAGCGGAA GTCTAAAGCT GAACGTAAAT CTCCGATTGT GTACCACAAA GTAGCCCCTG GTCAGAGCCT GATCGGTATC GCCAATAAAT ATCATGTAGA GGTACAGGAC CTGAAGGTCT GGAACAATCT AAAAGGATCA ACAATTGTTC CGGGGCAACG TCTGAAAATT TATAGCAACA CTGAAGGAAG GCATACAGCA GCCCCGCTAA GAGGTTAA
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Protein sequence | MRLIVRFVSY CILAFTCFTA AAQQRMLQIT DTTYVPVVEE ATTFYNHNYM YKARLDSIQK IVPLSYNEYV QKYIDIYAGR KDMMGKMLGL SGYYFPIFEK ALKSYNIPEE IKYLPIIESS MNPHAVSRVG ATGLWQFMFA TAKGYGLNMD NFVDERKDPI QASYAAAAYF RDAYEELGDW LLAIAAYNCG MGNVNRAIAK ADSRDFWEIR RFLPMETRNY VPAFIAAVYV MNYSGKHEIK AQRTVFLKNT DTIQVNRFVS LPSLAEALNI EVEELWSLNP SYKKKIVNGS ELSPKRVILP KVSLASFTRV YELLNETEAD VDKHIILASN DNQLKRKSKA ERKSPIVYHK VAPGQSLIGI ANKYHVEVQD LKVWNNLKGS TIVPGQRLKI YSNTEGRHTA APLRG
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