| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3744 |
|---|
| Symbol | |
|---|
| ID | 8254876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4472618 |
|---|
| End bp | 4474657 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644937406 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_003093997 |
|---|
| Protein GI | 255533625 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000811796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGTAT TAGGGAACCC AAAAAATAAA CAAATTAATA TTCCAATGAA AACAAAGATA
CTCCTGATCC TCTGCTTATT TGCTTCCGTA GCACAGGCAC AATTTGTAAC CAATAATAAA
AGAGTGGCAG ATGTATATTT CCAGAATAAA GAATATTATG CAGCTGCCGA ATATTATAAA
AAAGCCTTAC AGATCTCTGC CGATAGTGTT GGTTTTATAG TGCCCTACGG TTTTGAAAAT
AAGATAAAAG AAGAGAGCCC TAAAAAAGAC GATTATGAGT ACTGTGTTTT TCAGCTCGCG
GAAGCATTAA GGTTATATAA AAATTTTATA GATGCCGAAA AATGGTATGC AATGGCTAAG
GATTTTACCA ATCCTAAATA CATTCTTAGT ACATTCTGGT ATGCGGAAAC CCAGCGCTCA
AACCAGAAGT TTGAGGATGC GATCGCTTCA TTTAATACCT TCCTGGAAAA ATATAATGTA
AAAGATGGTT ATGCAGCCAA AGCCAGAACA GAAATTGCCT CCTGCCAGTT TGCGCTGAAT
GAACTGCGTT ACCCAAGGTT GTTCAGGTTA AGCAGACTTC AGAATAACAT TAATGACAAA
GGATCTAATT ATACGCCAAC TATAAAGGGA GGGAATTTTT ATTTCACTTC TTCCCGGCCA
ATAGGGAGCA GCGGAAAGAA AGAGGTGCTG TCGGATAAAA ATGTAAAAGT GGCCAAAAAA
GAAACCCCCT TTATAAATGC GGTATATGTA GCAACGGGAA ACCCGCTCAC GGAAAGTATT
TCCATCAGAA AAACGGCAGT TGATGGTGCA GCCAAAGAAT CGGCTGCCCC GGCATTTCAT
CCGAATGGGA AGATAGCCTA TGTAACCAGC TGGACTGCCC TTGGCAATAA AAAGATCTAT
CAGTTAAACG CTACACCTGG TGTAGGAAAA GACTGGTCAG AACCCATAGA ACTGGGTGGC
CAGATCAATG TAAAAGGCTT TAATGCCATG CAGCCTTTTG TAACAAGAGA CGGGAAATAC
CTGGTCTTCT CGTCCGACAG ACCGGGAGGT TCAGGTAAGT ACGACCTTTG GTATGCCCCT
ATCCGTACGG ATGGCTCGCT TGGCCTTGCT GTAAATATGG GAAAGGTAAT CAACACACCC
GATGATGAGG AAGCCCCTTA TTACAATGTG TCTACTAAAA AACTGCTTTA CAGCAGTAAT
GGAAGAGTAG GTATGGGCGG TTTCGATTTC TTTGAAAGTG AAGGCGATTT TGGAAAATGG
ACCGAACCCA GAAACTTGGG CTATCCTTTT AACTCTTCCA AAGATGACCT TTATTTTACC
CCTTTGGACA ATGCAGATTC GGAAGGATAT ATCAGCTCAG ACCGCGAATC TGTTTGTTGC
CTGGAGATTT TCCATGTGAA AAGGGAGTTC CTGGTGATAC AGGGAATACT GCTGGACTGC
CATACCCGCA AACCGCTGCA GGATGCAACA GTTACCCTTG CCGATTCTGC ACAGCAGTTT
AAGTTTACAA CTGATGAAAA CGGTCAGTAT ACCTTTAAAA TAAATTCTAA CCGTGGGTTT
AAACTTACCG CCGAGAAGGA AAAATACTTT AGTAAAAACA TTTCGTTCAG CTACGACCAG
CTGGCCCAGA AAGATACTTT GTTTAGTCCG GAGCTTTGCC TCATCCCTTA TGAAATAGAT
AAGCCCATTG TGCTTAAAGA TGTTTTGTAT GAATTTAATA AAGCCGACCT GACCGAGGAT
TCAAAAGGGA AACTGGATTA CCTGTATACC ATCATGGTGG ATAACCCTAC GATAGAAATA
GAGCTTAGCT CGCATACAGA TAGCAAAGGG GGCGAAGCTT ATAACATGGA CCTTTCGGAA
AGAAGGGCAA AGTCCTGTGT CGATTATCTA ATCGGAAAAG GCATCCCTAA AAACAGGATG
ACCAGTAAGG GCTACGGAAA AACCAGGCCC ATAGCCCCAA ATGAATTTCC CAACGGAAAG
GATAACCCTG CCGGAAGGGC GTTGAACAGA AGAACAGAAT TTAAGGTTAC CAAAAAATAG
|
|---|
| Protein sequence | MLVLGNPKNK QINIPMKTKI LLILCLFASV AQAQFVTNNK RVADVYFQNK EYYAAAEYYK
KALQISADSV GFIVPYGFEN KIKEESPKKD DYEYCVFQLA EALRLYKNFI DAEKWYAMAK
DFTNPKYILS TFWYAETQRS NQKFEDAIAS FNTFLEKYNV KDGYAAKART EIASCQFALN
ELRYPRLFRL SRLQNNINDK GSNYTPTIKG GNFYFTSSRP IGSSGKKEVL SDKNVKVAKK
ETPFINAVYV ATGNPLTESI SIRKTAVDGA AKESAAPAFH PNGKIAYVTS WTALGNKKIY
QLNATPGVGK DWSEPIELGG QINVKGFNAM QPFVTRDGKY LVFSSDRPGG SGKYDLWYAP
IRTDGSLGLA VNMGKVINTP DDEEAPYYNV STKKLLYSSN GRVGMGGFDF FESEGDFGKW
TEPRNLGYPF NSSKDDLYFT PLDNADSEGY ISSDRESVCC LEIFHVKREF LVIQGILLDC
HTRKPLQDAT VTLADSAQQF KFTTDENGQY TFKINSNRGF KLTAEKEKYF SKNISFSYDQ
LAQKDTLFSP ELCLIPYEID KPIVLKDVLY EFNKADLTED SKGKLDYLYT IMVDNPTIEI
ELSSHTDSKG GEAYNMDLSE RRAKSCVDYL IGKGIPKNRM TSKGYGKTRP IAPNEFPNGK
DNPAGRALNR RTEFKVTKK
|
|---|
| |