Gene Phep_3710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3710 
Symbol 
ID8254842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4424331 
End bp4425734 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content43% 
IMG OID644937372 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_003093963 
Protein GI255533591 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATACG ATGTAGTTGT AATTGGCTCG GGCCCGGGCG GTTATGTTGG AGCAATCAGA 
TGTGCCCAGT TAGGCTTAAA AACAGCAGTT ATAGAGAAAT ATAAAACTTT TGGGGGAACC
TGTTTAAATG TAGGATGTAT TCCTTCCAAG GCCCTGTTGG ATTCTTCAGA GCATTTTCAT
AATGCTGCAC ATACTTTTCA GACGCATGGC ATTAATCTGA AAGATTTAAA GGTGGATATG
CCGCAAATGA TTGCCCGTAA AAATGATGTG GTGGCGCAAA ATACTGCTGG GATACAATAT
TTGTTTAAAA AGAATAAAAT TGATGCTTTT GAGGGTGTAG GTTCTTTTAT AGATAAAAAT
ACGATTAAGA TTACCAAAGA TGGTAAATCG GAGACCATAA CAGCTAAAAA TGTAATCATT
GCGTCGGGTT CAAAACCTAC TGCATTGCCT TTTTTACCTG TTGATAAAAA ACGGATCATC
ACTTCTACAG AAGCTTTAAA CATCACTGAG GTACCTAAGC AGATGGTAGT TATTGGCGGT
GGTGTAATTG GACTGGAACT AGGTTCGGTA TATGCACGTT TAGGTACAAA AGTATCGGTG
ATTGAATTTA TGCCATCAAT TATAGGTACC ATGGATGCCG GTCTAGGTAA AGAACTGCAG
CGTGTATTGA AAAAATCGCT TGGTATGGAG TTTTTTATGG GCCATAAAGT TACCGGGGCA
AGTACCAAGG GCAAGAAAGT TACGGTTACA GCAACCAATG CCAAAGGAGA AGAGGTGAAA
TTTGAAGCAG ATTATTGCAT TGTTGCAGTT GGGCGTACAG CTTATACAGA AGGATTGGGG
CTGGAAAACA TAGGTATCAA ACCTGAAGAA AGAGGAAATA AAATCCCGGT GAACGATCAC
CTGGAAACGA CAGTCCCGGG TGTGTATGCG ATAGGTGATG TGATTAAGGG TGCTATGCTT
GCCCATAAGG CCGAAGATGA GGGCGTATAT GTTGCAGAGC GGATTGCGGG ACAAAAACCA
CACATCAATT ATAACCTGAT TCCGGGCGTG GTTTATACCT GGCCGGAAGT AGCTTCGGTA
GGCTATACCG AAGAGCAGCT GAAAGAAAAA GGACTATCAT ACAAAACAGG TTCCTTTCCA
TTTAAGGCCA GTGGCCGTGC CAAGGCAAGT ATGGATACAG ATGGCTTTGT AAAAGTACTT
GCAGATGCTA AAACAGATGA AATTTTAGGT GTACACATGA TTGGACCAAG GGCTGCAGAT
ATGATTGCAG AGGCTGTTGT TGCTATGGAA TTCCGTGCCT CAGCAGAAGA CATTGCCAGG
ATCTGTCATG CACACCCTAC TTATACAGAG GCGATGAAAG AGGCTGCTAT GGCAGCGACA
GAGAACCGGG CCATCCACAT TTGA
 
Protein sequence
MQYDVVVIGS GPGGYVGAIR CAQLGLKTAV IEKYKTFGGT CLNVGCIPSK ALLDSSEHFH 
NAAHTFQTHG INLKDLKVDM PQMIARKNDV VAQNTAGIQY LFKKNKIDAF EGVGSFIDKN
TIKITKDGKS ETITAKNVII ASGSKPTALP FLPVDKKRII TSTEALNITE VPKQMVVIGG
GVIGLELGSV YARLGTKVSV IEFMPSIIGT MDAGLGKELQ RVLKKSLGME FFMGHKVTGA
STKGKKVTVT ATNAKGEEVK FEADYCIVAV GRTAYTEGLG LENIGIKPEE RGNKIPVNDH
LETTVPGVYA IGDVIKGAML AHKAEDEGVY VAERIAGQKP HINYNLIPGV VYTWPEVASV
GYTEEQLKEK GLSYKTGSFP FKASGRAKAS MDTDGFVKVL ADAKTDEILG VHMIGPRAAD
MIAEAVVAME FRASAEDIAR ICHAHPTYTE AMKEAAMAAT ENRAIHI