Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3683 |
Symbol | |
ID | 8254814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 4395806 |
End bp | 4397509 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644937344 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_003093936 |
Protein GI | 255533564 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGAAAA GATGGGTGCA GGCTTTACAG GGCAATAAAG AGACAACAGC GCTGCTTGCA CAACAATTAA ACATAGACAG CAGTTTGGCC CAGATACTGG TACAAAGGGG TATTTCCTCT TTCGAAGAGG CAAGGCAATA TTTCAGACCG GACATGGGCA GGTTACACGA TCCTTTTTTA ATGAAGGACA TGGACAAAGC TATTGAACGT ATTGATAAGG CCATTAACAG TCGCGAAAAG ATATTGGTTT ATGGCGATTA TGATGTAGAC GGGACCACAT CTGTAGCCCT TGCCTTTAGT TTCTTTAGCC AGTTTACAGA TCAGATAGGC TATTATATTC CGGACAGACA TAAAGAAGGT TATGGCATTT CTACAGCAGG GATTGATTAT GCAAATGCAA ATGGCATCAG CTTAATTATT GCGCTTGACT GTGGGATAAA ATCAACAGAT AAAATAGCTT ATGCCAATAG TCTGAATATC GATTTTATCA TCTGTGACCA TCATTTACCT GGTGAGGTAT TACCGGCTGC AGTGGCCATA CTTGATCCAA AACGGAAGGA TTGCCCCTAC CCTTTTAAAG AGCTGGCTGG TTGTGGTATT GGATTTAAAC TGGCACAGGC TTACTGCCTG CAGCATCGCC TACCTCAGGA GCAGTATGAG CGTTACCTGG ACCTGGTGAT GGTAAGTATT GCGGCCGACA TTGTCCCGAT AGAAGATGAA AACCGGATAC TGGCTTATCA CGGCCTGATT AAGCTGAACA GCAATCCCTG TATAGGGCTC AAGGCATTGA TGGACATATC AGGAAAAAAC AAAGATTACA CCCTTACCGA CGTGGTATTT ACACTTGCCC CACGTATTAA TGCTGCCGGA AGGATGGATC ATGCCAACCA GGCAGTAAAA ATGTTGCTCT GTACGGAGGA TAATCTGGCA CAGGAACAGA GTTTACTGAT CAACCTTCAA AATACAGAAC GCAAAACTTC GGACCAGAAC ATGACTGCCG AAGCCCTGGC ATTGATAGCT GAATGTGAAA TCCTCATCAA TAAAAAAACA ACCGTTGTTT ACCATGAAAA CTGGAATAAA GGGGTAATTG GTATTGTAGC CTCGAGGCTG ACAGAAAAAT ATTATCGTCC TACAGTCGTA CTTACCAAAT CGAATGGTCT GTTAACCGGA TCTGCACGTT CTGTAGCAGG GTTTGACCTC TATGAGGCAC TACTGGGCTG CGAAGATCTA CTGGTACAAT TTGGCGGACA TAAATTTGCA GCCGGATTAA CCATAAAAGC TGAAGATATC GGTTTTTTCA CAGAACGTTT CGAAAACATA GTTGCTGCAA CCATTACGGA AGACCTGCTT TGTCCCGAAA TCAGTATAGA CAACGAGATC CGGTTAAGGC AGATAGATGG AAAATTTCAG CGCATTATTG CTCAAATGGC CCCTTTTGGC CCACACAATA TGGCCCCTGT ATTTGTGAGC CATGAAGTAT TTCTAGCCAG CAAACCTTAT GTTGTAGGCA CAAAACATTT AAAATTAGCT ATAAAACAAC AAAATTCATC TATTTTTGAA TGCATAGCTT TTGGAATGGC TGAAGAATAT GAACAACTGT TACAACCAAA CCAGCCTTTT TCTGTTTGTT ATACAATTGA AGAAAATATA TGGAAAGCGC AAAAGCGTTT ACAGTTAAAT ATTAAAGAGA TTAAACTGAA TTGA
|
Protein sequence | MKKRWVQALQ GNKETTALLA QQLNIDSSLA QILVQRGISS FEEARQYFRP DMGRLHDPFL MKDMDKAIER IDKAINSREK ILVYGDYDVD GTTSVALAFS FFSQFTDQIG YYIPDRHKEG YGISTAGIDY ANANGISLII ALDCGIKSTD KIAYANSLNI DFIICDHHLP GEVLPAAVAI LDPKRKDCPY PFKELAGCGI GFKLAQAYCL QHRLPQEQYE RYLDLVMVSI AADIVPIEDE NRILAYHGLI KLNSNPCIGL KALMDISGKN KDYTLTDVVF TLAPRINAAG RMDHANQAVK MLLCTEDNLA QEQSLLINLQ NTERKTSDQN MTAEALALIA ECEILINKKT TVVYHENWNK GVIGIVASRL TEKYYRPTVV LTKSNGLLTG SARSVAGFDL YEALLGCEDL LVQFGGHKFA AGLTIKAEDI GFFTERFENI VAATITEDLL CPEISIDNEI RLRQIDGKFQ RIIAQMAPFG PHNMAPVFVS HEVFLASKPY VVGTKHLKLA IKQQNSSIFE CIAFGMAEEY EQLLQPNQPF SVCYTIEENI WKAQKRLQLN IKEIKLN
|
| |