Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3623 |
Symbol | |
ID | 8254754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4329727 |
End bp | 4331172 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644937284 |
Product | RNA methyltransferase, TrmA family |
Protein accession | YP_003093876 |
Protein GI | 255533504 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAGAA ATAGAAAAGC CGGAACGGTA ACTATCATTC CTGATTTAAG TATTATTGAT ATTGCCGAAG AAGGAAAAGG CGTAGGTAAA GCAGATGAAC TGGTTGTTTT TGTAGAAAAA GCTGTACCGG GTGATGTGGT GGATGTTCGG GTGATAAAGA AGAAGAAAAA CTTTGCTGAA GCTGTAATAG AGCAGTTACA TAAAAAATCA GCATTCAGGA CAGAACCATT TTGCCAGCAC TTTGGTACCT GTGGCGGCTG TAAATGGCAA CAGATGGAAT ATGCTGCACA GCTGAAGTTT AAGCACAAAA ATGTGGAGGC TGCATTGCAG CGCCTTGCAA AAATTGATAC GACCGGTATG GAGCCCATTC TGGGTTCTGC ACAAAATAAA TATTATAGAA ATAAACTCGA ATATACTTTT TCCAATAAGC GCTGGCTGAA TAAGACCGAC ATGATGGAAG GGGCTGAAAC CGGTGCGCCC AATCCGGAAC TGGAAATGAA TGCGCTGGGT TTTCATGTGC CCTTACGTTT TGATAAAATA TTAGACATTG AGCATTGTTA TTTGCAGGCG GAGCCTTCCA ATACCATCCG CAATGAGGTT CGGGATTATG CTTTAAAAGC CGGACTTTCG TTCTATGACC TGCGTAACCA CGAAGGTAGC CTCAGGAACC TGGTCATCCG TACTTCATCA ACCGGCGAAG TGATGGTGGC AGTGGTTTTT GCTTATGTGG AGCAGGAAGA GATCATTGGT TTAATGGAGT TCCTGAAAAA CCGTTTCCCG GAAATTACTG CGCTGTTGTA CATTGTGAAC CAGAAAAAAA ACGACACTAT TTTTGACCAG GAAGTGATCA CTTACGCTGG ACGGGACCAT ATCTTTGAAG AGATGGAAGG TCTGAAATTT AAGATAGGTG TAAAATCTTT TTACCAGACC AACTCTGATC AGGCGCATGA ACTGTATAAG ATTACCAAAG AATTTGCAGG TTTTTCTGGT GATGAGCTGG TGTATGATCT TTATACCGGA GCTGGTACCA TTGCCAATTT TGTAGCCCGG AGCGTAAAAC AGGTGGTAGG TATTGAATAT GTACCTACAG CGATTGAAGA CGCGAAGTTT AATGCAACGC TGAATGGCAT TGACAATACG GTTTTCTATG CGGGAGACAT GAAAGACATC CTGACCAGGG AATTTATAGC TGAACATGGT AAACCTGATG TGGTAATTAC CGATCCGCCA AGGGCAGGGA TGCATGCTGA TGTGGTAGAA CGGCTTTTGG AAATGGAAGC AGGGAAAATA GTGTATGTGA GCTGTAATGC TGCCACCCAG GCACGCGACC TGGCCCTGCT GAAAGAAAAA TATGAAGTAG TAAGGATTAA ACCTGTTGAC ATGTTTCCGC ATACACAGCA TGTTGAAAAT GTAGTGCTGC TGAAGTTTAC AGGTGCACAA CCATAA
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Protein sequence | MSRNRKAGTV TIIPDLSIID IAEEGKGVGK ADELVVFVEK AVPGDVVDVR VIKKKKNFAE AVIEQLHKKS AFRTEPFCQH FGTCGGCKWQ QMEYAAQLKF KHKNVEAALQ RLAKIDTTGM EPILGSAQNK YYRNKLEYTF SNKRWLNKTD MMEGAETGAP NPELEMNALG FHVPLRFDKI LDIEHCYLQA EPSNTIRNEV RDYALKAGLS FYDLRNHEGS LRNLVIRTSS TGEVMVAVVF AYVEQEEIIG LMEFLKNRFP EITALLYIVN QKKNDTIFDQ EVITYAGRDH IFEEMEGLKF KIGVKSFYQT NSDQAHELYK ITKEFAGFSG DELVYDLYTG AGTIANFVAR SVKQVVGIEY VPTAIEDAKF NATLNGIDNT VFYAGDMKDI LTREFIAEHG KPDVVITDPP RAGMHADVVE RLLEMEAGKI VYVSCNAATQ ARDLALLKEK YEVVRIKPVD MFPHTQHVEN VVLLKFTGAQ P
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