Gene Phep_3623 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3623 
Symbol 
ID8254754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4329727 
End bp4331172 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content43% 
IMG OID644937284 
ProductRNA methyltransferase, TrmA family 
Protein accessionYP_003093876 
Protein GI255533504 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAGAA ATAGAAAAGC CGGAACGGTA ACTATCATTC CTGATTTAAG TATTATTGAT 
ATTGCCGAAG AAGGAAAAGG CGTAGGTAAA GCAGATGAAC TGGTTGTTTT TGTAGAAAAA
GCTGTACCGG GTGATGTGGT GGATGTTCGG GTGATAAAGA AGAAGAAAAA CTTTGCTGAA
GCTGTAATAG AGCAGTTACA TAAAAAATCA GCATTCAGGA CAGAACCATT TTGCCAGCAC
TTTGGTACCT GTGGCGGCTG TAAATGGCAA CAGATGGAAT ATGCTGCACA GCTGAAGTTT
AAGCACAAAA ATGTGGAGGC TGCATTGCAG CGCCTTGCAA AAATTGATAC GACCGGTATG
GAGCCCATTC TGGGTTCTGC ACAAAATAAA TATTATAGAA ATAAACTCGA ATATACTTTT
TCCAATAAGC GCTGGCTGAA TAAGACCGAC ATGATGGAAG GGGCTGAAAC CGGTGCGCCC
AATCCGGAAC TGGAAATGAA TGCGCTGGGT TTTCATGTGC CCTTACGTTT TGATAAAATA
TTAGACATTG AGCATTGTTA TTTGCAGGCG GAGCCTTCCA ATACCATCCG CAATGAGGTT
CGGGATTATG CTTTAAAAGC CGGACTTTCG TTCTATGACC TGCGTAACCA CGAAGGTAGC
CTCAGGAACC TGGTCATCCG TACTTCATCA ACCGGCGAAG TGATGGTGGC AGTGGTTTTT
GCTTATGTGG AGCAGGAAGA GATCATTGGT TTAATGGAGT TCCTGAAAAA CCGTTTCCCG
GAAATTACTG CGCTGTTGTA CATTGTGAAC CAGAAAAAAA ACGACACTAT TTTTGACCAG
GAAGTGATCA CTTACGCTGG ACGGGACCAT ATCTTTGAAG AGATGGAAGG TCTGAAATTT
AAGATAGGTG TAAAATCTTT TTACCAGACC AACTCTGATC AGGCGCATGA ACTGTATAAG
ATTACCAAAG AATTTGCAGG TTTTTCTGGT GATGAGCTGG TGTATGATCT TTATACCGGA
GCTGGTACCA TTGCCAATTT TGTAGCCCGG AGCGTAAAAC AGGTGGTAGG TATTGAATAT
GTACCTACAG CGATTGAAGA CGCGAAGTTT AATGCAACGC TGAATGGCAT TGACAATACG
GTTTTCTATG CGGGAGACAT GAAAGACATC CTGACCAGGG AATTTATAGC TGAACATGGT
AAACCTGATG TGGTAATTAC CGATCCGCCA AGGGCAGGGA TGCATGCTGA TGTGGTAGAA
CGGCTTTTGG AAATGGAAGC AGGGAAAATA GTGTATGTGA GCTGTAATGC TGCCACCCAG
GCACGCGACC TGGCCCTGCT GAAAGAAAAA TATGAAGTAG TAAGGATTAA ACCTGTTGAC
ATGTTTCCGC ATACACAGCA TGTTGAAAAT GTAGTGCTGC TGAAGTTTAC AGGTGCACAA
CCATAA
 
Protein sequence
MSRNRKAGTV TIIPDLSIID IAEEGKGVGK ADELVVFVEK AVPGDVVDVR VIKKKKNFAE 
AVIEQLHKKS AFRTEPFCQH FGTCGGCKWQ QMEYAAQLKF KHKNVEAALQ RLAKIDTTGM
EPILGSAQNK YYRNKLEYTF SNKRWLNKTD MMEGAETGAP NPELEMNALG FHVPLRFDKI
LDIEHCYLQA EPSNTIRNEV RDYALKAGLS FYDLRNHEGS LRNLVIRTSS TGEVMVAVVF
AYVEQEEIIG LMEFLKNRFP EITALLYIVN QKKNDTIFDQ EVITYAGRDH IFEEMEGLKF
KIGVKSFYQT NSDQAHELYK ITKEFAGFSG DELVYDLYTG AGTIANFVAR SVKQVVGIEY
VPTAIEDAKF NATLNGIDNT VFYAGDMKDI LTREFIAEHG KPDVVITDPP RAGMHADVVE
RLLEMEAGKI VYVSCNAATQ ARDLALLKEK YEVVRIKPVD MFPHTQHVEN VVLLKFTGAQ
P