| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3596 |
|---|
| Symbol | |
|---|
| ID | 8254718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4288503 |
|---|
| End bp | 4291682 |
|---|
| Gene Length | 3180 bp |
|---|
| Protein Length | 1059 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644937248 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003093849 |
|---|
| Protein GI | 255533477 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAA ACTTACTTTT TACCATGTTA TTGGTTCTGG GTATTCCGCT GGCCGGTCTG
GCCCAGGCGG TAAAAACCAT AACCGGAACT GTTATTGATG AAAAAGGAGG TCCTTTACCC
GGCGTAAAAG TAGTCCTTCA GGGAAAAGCT ACATCGGGGG TAACAGATGG CCAGGGCCAC
TTTAGCCTTT CCAATACCAA AGAAGGCGAT TTGCTGCTGG TCTCCATGAT TGGCTACACC
AGCAAAACAG TGATCGTAAG CAGCCAAAAT CAGTATAAAA TCCAACTGGA AACCAGTAGT
ACGTCCTTAA ATGATGTGGT CATTATTGGT TATGGGGAAG TAAAGCGAAA AGACCTTACC
GGTGCAGTGG GCTCTGTTAA CATAAAAGAT ATGGAAAAGG CGCCGGTGGT TTCTTTTGAA
GATGCCCTGG CAGGACGTGT GGCTGGTGTA CAGGTCGGAT CCGGCGATGG CCAACCGGGT
AGTATCAGTA ACATCACCAT CCGGGGTGGA AATTCAATTA CCCAATCAAA CTCACCACTT
TATGTGATTG ATGGCTTTCC TTTGGAAAGC CCAGATAACA ATACCATTAA TCCGGACGAT
ATCGAGTCAA TAGATATATT GAAAGACGCA TCTTCTACGG CAATTTATGG GGCAAGGGGG
GCTAATGGGG TGATCATGAT CAAAACTAAG GAGGGTAAGG TAGGCGCGCC GGTGGTTACC
TATAACAATT GGCTGGGCTA TCAGTACCCA GGTAAACAGA TAGAGGTGAT GAGCCCTTAT
GAGTTTGTGA AATATCAGTT GGACTTGAAT AAGACGTCCG CTACCGCTTT GTATCTTAAG
GATGGAAAAA CCCTGGATGC ATACCGGAAT GAGCAGGGAA TAAACTGGCA GGACCATGTA
ATGCAGAACG CATTTATGCA AAATCATAGC TTCTCTATGA GAGGTGGAAC TGCGGCCACA
AAGTATTCGG TGAGCAGCTC TTATTTAAAT CAAAATGGAA TTGTTATTAA TGGTGGATAT
AAAAGATACC AGGGCCGGTT TCAAATAGAT CAACGTGTGG GACAAAATAT AAGAATTGGC
CTTAATACCA ATTATACATA CGGAATCAAA AAAGGTCAGA TTGCCAATTT AACCAGTGAT
AACCTAAACA GCAGTTCGGC AGGAAATGCC AGTTCATATT TGATGTACAG CACCTGGGGA
TACAGGCCGG TAACGGGTAG CGGGGATGAT GGGAATTTCC TTGACCAACC TTTTGATGAT
GATGTTGCTT CCAATACAGA TTTAAGGATC AACCCTGTGG TAAACTCCAA CAACATGTAT
CAGTATGCTT TTAATAAATC GCTTAGTGCC AATGCTTTTG TGGAGTATTC TTTTCTGAAG
TATTTTAAGT TTAAGGTAAG TGGAGGAATG ACAGATACTC GTCTTGCGTT CGAACGTTTT
AACAATTCCA ATACGGCAGC CGGAAATCCG CGGACCGTTT ATGGGCAAAA CTATGGTATC
AACGGTTCAC TTGAAAACCA GAATATCCGC AGTTTACTGA ACGAGAACCT GCTCACCTTT
AACAAAACAT TTAACAAGAA GCACCGTTTA GACGCTGTAG GTGGTTTTAC CATGCAGAGG
AATAGTATGG AGGGGGATGG ATTTGTTTCT ATTTTATTGC CAAATGAAGT ACTGGGCGTG
AGAGGGCTTG GCCAGGGTAC TATACTTTCA AAAACAACTA CCGGTACTTA TTCCACACTG
GTATCATTTC TTAGCCGGGT TAATTATACG TTTAACTCCC GCTATATATT TACCGCATCT
TTACGTGCCG ACGGCTCTTC CAAATTTGCT CCGGAAAGCA GGTGGGCATA TTTTCCTTCC
GGGGCCTTTG CCTGGAATAT AGGGGAAGAG AAATTTTTGA AGGACATTAA AGCTATTTCT
GCTGCAAAAC TGAGGTTGTC GTATGGGATT ACCGGAAACA ACAGGGTTTC GGATTTTGCC
TATCTACCTG TGTTAGGTAT GGAAGTAGGT GCCAATACCG GGAATACCAA AAGTGGTTAT
TATTTTAACG GTCAATACAT TAAAGGAACG GTTCCAATTG GGGTAGGAAA TGAAGACCTC
AAATGGGAAC CTACCGGCAG TTTTGACGCG GGACTCGATC TCAGCTTTTT TAACCAGCGT
CTGAGTATTA CTGCTGATTT CTATCATAAA AGAACCTCTG ATTTACTACT GAATGCTTCT
TTGCCTACAT CAACAGGATA CCTTACTGCC TTTAAAAATA TAGGTGTTGT GGTAAACAAG
GGATTTGAGT TTACCCTAAA TACGGTAAAC CTGAGTTCAA AGCGGTTTAA CTGGACATCC
AGTTTCAACA TTGCCTTCAA TAAGAACAAA ATTGATGAAC TGAATGGCAA CCAACCAAGC
CTGATTACGC GGGTTACCAG CTGGAATGCC AATTTTAATA ATTCACTGCC CTATATTGCT
TTGCCAGGGC GGCAGGTAGC TTTATTTTAC GGTTATGTTT TTGATGGACT ATACCAATTG
AACGATTTTA ATGTATTGTC GAACGGAAGT TACGAGCTGA AAGGGGAAGT GCCTAACAAT
GGTAGTGCAC GTTCGCTGAT TAAGCCAGGG TTCATTAAAT ACAAAGACAT CAATGGAGAT
GGTATTGTCG ACGCAAATGA CCAGACGATC ATAGGTAATC CTAATCCCTT GCACATTGGC
GGATTGACCA ATAATTTCAG GTATGGACAA TTCGACCTCA ACGTTTTCTT ACAGTGGTCG
TACGGTAATG ATATTTTAAA TGCAAACCGG ATCGTATTTG AAGGAGCGGA AGCAAGACCA
AGCCTGAATA TGTTTAAGAC CTATGAAAAC AGATGGTCTG TAGAAAATCA GAATAGTGTG
CTGCCGGTTG CCGGTGGTTA TGGCCCCAAT GTATTCTCTG ACAGAAATAT TGAAGATGGT
TCATTTCTTC GTTTAAAGAC GGTTTCTCTT GGCTATAACC TATCCCCCGA ACTGATGAAA
AGACTGAAGA TACAGTCGGT CCGCATCCAT GTTTCGGCAC AAAACCTGGT AACCTGGACG
AATTATTCGG GTCTGGATCC TGAAGTTTCA GTGCGGCATT CTTCGCTTAC ACCTGGTTTT
GACTGGAGCG CGTATCCACG GGCACGGACC ATCACCTTTG GTATGAACCT AACTTTTTAA
|
|---|
| Protein sequence | MKPNLLFTML LVLGIPLAGL AQAVKTITGT VIDEKGGPLP GVKVVLQGKA TSGVTDGQGH
FSLSNTKEGD LLLVSMIGYT SKTVIVSSQN QYKIQLETSS TSLNDVVIIG YGEVKRKDLT
GAVGSVNIKD MEKAPVVSFE DALAGRVAGV QVGSGDGQPG SISNITIRGG NSITQSNSPL
YVIDGFPLES PDNNTINPDD IESIDILKDA SSTAIYGARG ANGVIMIKTK EGKVGAPVVT
YNNWLGYQYP GKQIEVMSPY EFVKYQLDLN KTSATALYLK DGKTLDAYRN EQGINWQDHV
MQNAFMQNHS FSMRGGTAAT KYSVSSSYLN QNGIVINGGY KRYQGRFQID QRVGQNIRIG
LNTNYTYGIK KGQIANLTSD NLNSSSAGNA SSYLMYSTWG YRPVTGSGDD GNFLDQPFDD
DVASNTDLRI NPVVNSNNMY QYAFNKSLSA NAFVEYSFLK YFKFKVSGGM TDTRLAFERF
NNSNTAAGNP RTVYGQNYGI NGSLENQNIR SLLNENLLTF NKTFNKKHRL DAVGGFTMQR
NSMEGDGFVS ILLPNEVLGV RGLGQGTILS KTTTGTYSTL VSFLSRVNYT FNSRYIFTAS
LRADGSSKFA PESRWAYFPS GAFAWNIGEE KFLKDIKAIS AAKLRLSYGI TGNNRVSDFA
YLPVLGMEVG ANTGNTKSGY YFNGQYIKGT VPIGVGNEDL KWEPTGSFDA GLDLSFFNQR
LSITADFYHK RTSDLLLNAS LPTSTGYLTA FKNIGVVVNK GFEFTLNTVN LSSKRFNWTS
SFNIAFNKNK IDELNGNQPS LITRVTSWNA NFNNSLPYIA LPGRQVALFY GYVFDGLYQL
NDFNVLSNGS YELKGEVPNN GSARSLIKPG FIKYKDINGD GIVDANDQTI IGNPNPLHIG
GLTNNFRYGQ FDLNVFLQWS YGNDILNANR IVFEGAEARP SLNMFKTYEN RWSVENQNSV
LPVAGGYGPN VFSDRNIEDG SFLRLKTVSL GYNLSPELMK RLKIQSVRIH VSAQNLVTWT
NYSGLDPEVS VRHSSLTPGF DWSAYPRART ITFGMNLTF
|
|---|
| |