Gene Phep_3414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3414 
Symbol 
ID8254534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp4066367 
End bp4067278 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content45% 
IMG OID644937067 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_003093670 
Protein GI255533298 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAG TATTAGTTAC AGGAAGCAAC GGGCTTTTAG GCCAGAAAAT TACAGAACGT 
CTGTTGGTTA CCAACCAATT TGGCTTAATT GCGACAGCAA AGGGGGGCAA TCGTTTTCCT
GTTACCGAAG GGTATACTTA CGCCGAAATG GATATTCTTG ATCCGGAAAA TGTAAAAGCA
GTTGTGGAAA AGTATCAGCC TGATGCGATC ATCCATACGG CAGCAATGAC CAATGTGGAT
ACTTGTGAAG CAGAAAAGGA GCTTGCTTAC CAGTTAAATG TAGAAGCCGT TAAAACCCTG
GTATCGCTGT GCGAACTGCA CAATATCCAA CTGGTACACT TGTCTACCGA CTTTATATTT
GATGGTGCCC ATGGCCCCTA TGATGAACTG GCCGCACCCA ATCCTTTAAG TTATTACGGG
ATTACCAAGC TGGAAGCAGA AGAAGTGATC AAAAGTTCTA CCTGCCGCTG GGCCATTCTC
CGTACCATTA TAGTATATGG TATTGTGAGC GACATGAGCA GGACCAATAT TGTGCTTTGG
GCAAAAACTG CGCTGGAAAA AGGAAGCCCG ATCAATGTGG TAAACGACCA GTGGCGGATG
CCTACCTTGG CAGAAGACCT GGCAGATTGC TGCCTGCTGG CAGTAGAGAA AGATGCCCGT
GGTGTGTATA ATGCTTCAGG GAAAGATATG ATGCGTATTT CTGAACTGGT AGCCCGGGTG
GCTGATTATT GGGGGCTCAA TAAAAGCCTG ATTACTGAAA TCAGTTCTGA AAGTTTAAAC
CAGGCAGCTA AAAGACCTGT TAAAACTGGT TTTATATTAG ATAAGACCAT CAACGATCTT
GGCTATAGCC CACATAGTTT TGAAGAAGGC CTGGCAATAG TTGACCATCA GTTGGGCCTT
CGCCTCACAT AG
 
Protein sequence
MRTVLVTGSN GLLGQKITER LLVTNQFGLI ATAKGGNRFP VTEGYTYAEM DILDPENVKA 
VVEKYQPDAI IHTAAMTNVD TCEAEKELAY QLNVEAVKTL VSLCELHNIQ LVHLSTDFIF
DGAHGPYDEL AAPNPLSYYG ITKLEAEEVI KSSTCRWAIL RTIIVYGIVS DMSRTNIVLW
AKTALEKGSP INVVNDQWRM PTLAEDLADC CLLAVEKDAR GVYNASGKDM MRISELVARV
ADYWGLNKSL ITEISSESLN QAAKRPVKTG FILDKTINDL GYSPHSFEEG LAIVDHQLGL
RLT